Le informazioni pubblicate in questa pagina sono gestite in completa autonomia da LUCIANO MILANESI il/la quale se ne assume ogni responsabilità
H-index
Google Scholar H-Index: 38
Prodotti della ricerca
Andrea Calabria, Stefano Beretta, Ivan Merelli, Giulio Spinozzi, Stefano Brasca, Yuri Pirola, Fabrizio Benedicenti, Erika Tenderini, Paola Bonizzoni, Luciano Milanesi, Eugenio Montini
Y-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites
(2020) in Bioinformatics (Oxf., Print)
Zampolli, Jessica; Di Canito, Alessandra; Manconi, Andrea; Milanesi, Luciano; Di Gennaro, Patrizia; Orro, Alessandro
Transcriptomic Analysis ofRhodococcus opacusR7 Grown ono-Xylene by RNA-Seq
(2020) in Frontiers in microbiology
Troisi, Jacopo; Autio, Reija; Beopoulos, Thanos; Bravaccio, Carmela; Carraturo, Federica; Corrivetti, Giulio; Cunningham, Stephen; Devane, Samantha; Fallin, Daniele; Fetissov, Serguei; Gea, Manuel; Giorgi, Antonio; Iris, François; Joshi, Lokesh; Kadzielski, Sarah; Kraneveld, Aletta; Kumar, Himanshu; Ladd-Acosta, Christine; Leader, Geraldine; Mannion, Arlene; Maximin, Elise; Mezzelani, Alessandra; Milanesi, Luciano; Naudon, Laurent; Peralta Marzal, Lucia N.; Pardo, Paula Perez; Prince, Naika Z.; Rabot, Sylvie; Roeselers, Guus; Roos, Christophe; Roussin, Lea; Scala, Giovanni; Tuccinardi, Francesco Paolo; Fasano, Alessio
Genome, environment, microbiome and metabolome in autism (GEMMA) study design: Biomarkers identification for precision treatment and primary prevention of autism spectrum disorders by an integrated multi-omics systems biology approach
(2020) in Brain sciences
Italiani, Paola; Mosca, Ettore; Della Camera, Giacomo; Melillo, Daniela; Migliorini, Paola; Milanesi, Luciano; Boraschi, Diana
Profiling the Course of Resolving vs. Persistent Inflammation in Human Monocytes: The Role of IL-1 Family Molecules
(2020) in Frontiers in immunology
Bersanelli M.; Mosca E.; Milanesi L.; Bazzani A.; Castellani G.
Frailness and resilience of gene networks predicted by detection of co-occurring mutations via a stochastic perturbative approach
(2020) in Scientific reports (Nature Publishing Group)
Di Nanni N.; Bersanelli M.; Milanesi L.; Mosca E.
Network Diffusion Promotes the Integrative Analysis of Multiple Omics
(2020) in Frontiers in genetics
Cupaioli FA, Di Nanni N, Pelucchi P, Cifola I, Villa L, Raggi ME, Milanesi L, Mosca M, Mezzelani A
Linked read sequencing reveals new genetic variants in autism
(2020) Neurogenetics, Nature Conferences, Virtual (Covid19), 29/07/2020
F.A. Cupaioli, E. Mosca, N. Di Nanni, P. Pelucchi, L. Milanesi, M.E. Raggi, L. Villa, A. Mezzelani
Autism Spectrum Disorder: Linked-Read Sequencing Reveals New and Undetected Variants
(2020) EPTRI (European Paediatric Translational Research Infrastructure) open meeting 2020, virtual meeting, 02/04/2020 - 03/04/2020
Di Nanni, N.; Appierto, V.; De Marco, C.; Ortolan, E.; Milanesi, L.; Daidone, M.; Mosca, E.
Network diffusion for the integrative analysis of multiple "-omics": case studies on breast cancer
(2019) 51st European Society of Human Genetics Conference, 16-19/06/2018
Mezzelani, A.; Cupaioli, F. A.; Mosca, E.; Magri, C.; Gennarelli, M.; Raggi, M. E.; Landini, M.; Galluccio, N.; Chiappori, F.; Moscatelli, M.; Gnocchi, M.; Villa, C.; Molteni, M.; Bonfanti, A.; Ciceri, F.; Marabotti, A.; Milanesi, L.
Association of Haptoglobin-1 allele with Autism
(2019) in European journal of human genetics
Di Nanni N.; Gnocchi M.; Moscatelli M.; Milanesi L.; Mosca E.
Gene relevance based on multiple evidences in complex networks
(2019) in Bioinformatics (Oxf., Online)
Bugatti A.; Paiardi G.; Urbinati C.; Chiodelli P.; Orro A.; Uggeri M.; Milanesi L.; Caruso A.; Caccuri F.; D'Ursi P.; Rusnati M.
Heparin and heparan sulfate proteoglycans promote HIV-1 p17 matrix protein oligomerization: computational, biochemical and biological implications
(2019) in Scientific reports (Nature Publishing Group)
Di Nanni, Noemi; Bersanelli, Matteo; Cupaioli, Francesca Anna; Milanesi, Luciano; Mezzelani, Alessandra; Mosca, Ettore
Network-Based Integrative Analysis of Genomics, Epigenomics and Transcriptomics in Autism Spectrum Disorders
(2019) in International journal of molecular sciences (Online)
Di Nanni, Noemi; Moscatelli, Marco; Gnocchi, Matteo; Milanesi, Luciano; Mosca, Ettore
isma: an R package for the integrative analysis of mutations detected by multiple pipelines
(2019) in BMC bioinformatics
Vecchione, Carmine; Villa, Francesco; Carrizzo, Albino; Spinelli, Chiara Carmela; Damato, Antonio; Ambrosio, Mariateresa; Ferrario, Anna; Madonna, Michele; Uccellatore, Annachiara; Lupini, Silvia; Maciag, Anna; Ryskalin, Larisa; Milanesi, Luciano; Frati, Giacomo; Sciarretta, Sebastiano; Bellazzi, Riccardo; Genovese, Stefano; Ceriello, Antonio; Auricchio, Alberto; Malovini, Alberto; Puca, Annibale Alessandro
A rare genetic variant of BPIFB4 predisposes to high blood pressure via impairment of nitric oxide signaling
(2019) in Scientific reports (Nature Publishing Group)
Barbariga M.; Vallone F.; Mosca E.; Bignami F.; Magagnotti C.; Fonteyne P.; Chiappori F.; Milanesi L.; Rama P.; Andolfo A.; Ferrari G.
The role of extracellular matrix in mouse and human corneal neovascularization
(2019) in Scientific reports (Nature Publishing Group)
D'Ursi P.; Uggeri M.; Urbinati C.; Millo E.; Paiardi G.; Milanesi L.; Ford R. C.; Clews J.; Meng X.; Bergese P.; Ridolfi A.; Pedemonte N.; Fossa P.; Orro A.; Rusnati M.
Exploitation of a novel biosensor based on the full-length human F508de1-CFTR with computational studies, biochemical and biological assays for the characterization of a new Lumacaftor/Tezacaftor analogue
(2019) in Sensors and actuators. B, Chemical (Print)
Maccaferri M, Harris NS, Twardziok SO, Pasam RK, Gundlach H, Spannagl M, Ormanbekova D, Lux T, Prade VM, Milner SG, Himmelbach A, Mascher M, Bagnaresi P, Faccioli P, Cozzi P, Lauria M, Lazzari B, Stella A, Manconi A, Gnocchi M, Moscatelli M, Avni R, Deek J, Biyiklioglu S, Frascaroli E, Corneti S, Salvi S, Sonnante G, Desiderio F, Marè C, Crosatti C, Mica E, Özkan H, Kilian B, De Vita P, Marone D, Joukhadar R, Mazzucotelli E, Nigro D, Gadaleta A, Chao S, Faris JD, Melo ATO, Pumphrey M, Pecchioni N, Milanesi L, Wiebe K, Ens J, MacLachlan RP, Clarke JM, Sharpe AG, Koh CS, Liang KYH, Taylor GJ, Knox R, Budak H, Mastrangelo AM, Xu SS, Stein N, Hale I, Distelfeld A, Hayden MJ, Tuberosa R, Walkowiak S, Mayer KFX, Ceriotti A, Pozniak CJ, Cattivelli L
Durum wheat genome highlights past domestication signatures and future improvement targets
(2019) in Nature genetics (Print)
Sotgia S.; Zinellu A.; Paliogiannis P.; Pinna G.A.; Mangoni A.A.; Milanesi L.; Carru C.
A diethylpyrocarbonate-based derivatization method for the LC-MS/MS measurement of plasma arginine and its chemically related metabolites and analogs
(2019) in Clinica chimica acta (Print)
Nassa G, Salvati A, Tarallo R, Gigantino V, Alexandrova E, Memoli D, Sellitto A, Rizzo F, Malanga D, Mirante T, Morelli E, Nees M, Åkerfelt M, Kangaspeska S, Nyman TA, Milanesi L, Giurato G, Weisz A.
Inhibition of histone methyltransferase DOT1L silences ER? gene and blocks proliferation of antiestrogen-resistant breast cancer cells
(2019) in Science Advances
Bella, Pamela; Farini, Andrea; Banfi, Stefania; Parolini, Daniele; Tonna, Noemi; Meregalli, Mirella; Belicchi, Marzia; Erratico, Silvia; D'Ursi, Pasqualina; Bianco, Fabio; Legato, Mariella; Ruocco, Chiara; Sitzia, Clementina; Sangiorgi, Simone; Villa, Chiara; D'Antona, Giuseppe; Milanesi, Luciano; Nisoli, Enzo; Mauri, PierLuigi; Torrente, Yvan
Blockade of IGF2R improves muscle regeneration and ameliorates Duchenne muscular dystrophy
(2019) in EMBO molecular medicine (Print)
P. Romano; A. Céol; A. Drager; A. Fiannaca; R. Giugno; M. La Rosa; L. Milanesi; U. Pfeffer; R. Rizzo; S.Y. Shin; J. Xia; A. Urso
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes
(2019) in BMC bioinformatics
Carisetti M, Moscatelli M, Milanesi L, Mezzelani A, Chiappori F
CXCL10 binding mode to CXCR3 isoforms: different behaviors
(2019) CDDD 2019, Roma, 28-29/03/2019
M. Carisetti, M. Moscatelli, L. Milanesi, A. Mezzelani, F. Chiappori
CXCL10-CXCR3 complex formation, different isoforms result in different binding modes
(2019) BITS 2019, Palermo, 26-28/06/2019
Di Nanni, Noemi; Moscatelli, Marco; Gnocchi, Matteo; Milanesi, Luciano; Mosca, Ettore
isma - integrative somatic mutation analysis
(2019)
Noemi Di Nanni1,2, Luciano Milanesi1, Ettore Mosca1
Network diffusion-based gene prioritization integrating multiple omics and gene networks
(2018) 15th Annual Meeting of the Bioinformatics Italian Society, 27-29/06/2018
N. Di Nanni1,2, M. Gnocchi1, M. Moscatelli1, L. Milanesi1, E. Mosca1
Integrative analysis of multiple "-omics" with network diffusion
(2018) VI National Congress of Bioengineering, 25-27/06/2018
Ettore Mosca1, Valentina Appierto2, Noemi Di Nanni1,3, Cinzia De Marco2, Luciano Milanesi1 and Maria Grazia Daidone2
Functional gene networks underlying somatic mutations in Breast Cancer Initiating Cells
(2018) CSC 2018 - Cancer Stem Cells: impact on treatment, 11-15/12/2018
Beretta, Stefano; Castelli, Mauro; Munoz, Luis; Trujillo, Leonardo; Martinez, Yuliana; Popovic, Ales; Milanesi, Luciano; Merelli, Ivan
A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP
(2018) in Complexity (N.Y.N.Y.)
Moscatelli, Marco; Manconi, Andrea; Pessina, Mauro; Fellegara, Giovanni; Rampoldi, Stefano; Milanesi, Luciano; Casasco, Andrea; Gnocchi, Matteo
An infrastructure for precision medicine through analysis of big data
(2018) in BMC bioinformatics
Pischedda A, Ramasamy KP, Mangiagalli M, Chiappori F, Milanesi L, Miceli C, Pucciarelli S, Lotti M
Antarctic marine ciliates under stress: superoxide dismutases from the psychrophilic Euplotes focardii are cold-active yet heat tolerant enzymes
(2018) in Scientific reports (Nature Publishing Group)
Di Canito, Alessandra; Zampolli, Jessica; Orro, Alessandro; D'Ursi, Pasqualina; Milanesi, Luciano; Sello, Guido; Steinbuechel, Alexander; Di Gennaro, Patrizia
Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7
(2018) in BMC genomics
Rusnati, Marco; Sala, Davide; Orro, Alessandro; Bugatti, Antonella; Trombetti, Gabriele; Cichero, Elena; Urbinati, Chiara; Di Somma, Margherita; Millo, Enrico; Galietta, Luis J. V.; Milanesi, Luciano; Fossa, Paola; D'Ursi, Pasqualina
Speeding Up the Identification of Cystic Fibrosis Transmembrane Conductance Regulator-Targeted Drugs: An Approach Based on Bioinformatics Strategies and Surface Plasmon Resonance.
(2018) in Molecules (Basel, Online)
Mezzelani A, Cupaioli F, Mosca E, Magri C, Gennarelli M, Raggi ME, Landini M, Galluccio N, Chiappori F, Moscatelli M, Gnocchi M, Villa CL, Molteni M, Bonfanti A, Ciceri F, Marabotti A, Milanesi L.
Association of Haptoglobin-1 allele with Autism.
(2018) European Conference of Human Genetics 2018, Milano, Italy, 16/06/2018 - 19/06/2018
Carisetti M, Moscatelli M, Milanesi L, Mezzelani A, Chiappori F
Gliadin peptide deamidation: effects on CXCR3 binding and signal transmission
(2018) BITS 2018, Torino, 27-29/06/2018
Mezzelani A, Cupaioli FA, Raggi ME, Brera C, De Santis B, Milanesi L.
Neurotossicità dell'ocratossina A: effetti epigenetici e di accumulo
(2018) Nutrigenomica e alimentazione, Bari, 12/10/2018 - 13/10/2018
Piscitelli E, Karnavas T, Abeni E, Mosca E, Pelucchi P, Cocola C, Tria V, Moro M, Crosti MC, Zippo A, Milanesi L, Reinbold R, Bianchi M, Zucchi I.
Characterization of mammary cells derived from single cells with stem cell properties and organoid formation capacity by cell lineage tracing and cell tracking
(2017) SIBBM Frontiers in Molecular Biology -From single cells to 3Dcell culture-, Milan, Italy, 14-16 /06/ 2017
Di Nanni N, Appierto V, De Marco C, Angeloni V, Daidone MG, Milanesi L, Mosca E
Whole-exome sequencing of breast cancer initiating cells and paired primary tumors: the impact of variant callers and filtering strategies.
(2017) 14th Annual Meeting of the Bioinformatics Italian Society, 5-7/07/2017
Tordini, Fabio; Drocco, Maurizio; Misale, Claudia; Milanesi, Luciano; Lio, Pietro; Merelli, Ivan; Torquati, Massimo; Aldinucci, Marco
NuChart-II: The road to a fast and scalable tool for Hi-C data analysis
(2017) in The international journal of high performance computing applications
Panero, Riccardo; Rinaldi, Antonio; Memoli, Domenico; Nassa, Giovanni; Ravo, Maria; Rizzo, Francesca; Tarallo, Roberta; Milanesi, Luciano; Weisz, Alessandro; Giurato, Giorgio
iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data
(2017) in Bioinformatics (Oxf., Print)
Cocola, Cinzia; Molgora, Stefano; Piscitelli, Eleonora; Veronesi, Maria Cristina; Greco, Marianna; Bragato, Cinzia; Moro, Monica; Crosti, Mariacristina; Gray, Brian; Milanesi, Luciano; Grieco, Valeria; Luvoni, Gaia Cecilia; Kehler, James; Bellipanni, Gianfranco; Reinbold, Rolland; Zucchi, Ileana; Giordano, Antonio
FGF2 and EGF Are Required for Self-Renewal and Organoid Formation of Canine Normal and Tumor Breast Stem Cells
(2017) in Journal of cellular biochemistry (Print)
De Santis B.; Raggi M. E.; Moretti G.; Facchiano F.; Mezzelani A.; Villa L.; Bonfanti A.; Campioni A.; Rossi S.; Camposeo S.; Soricelli S.; Moracci G.; Debegnach F.; Gregori E.; Ciceri F.; Milanesi L.; Marabotti A.; Brera C.
Study on the Association among Mycotoxins and other Variables in Children with Autism.
(2017) in Toxins (Basel)
Giagulli, Cinzia; D'Ursi, Pasqualina; He, Wangxiao; Zorzan, Simone; Caccuri, Francesca; Varney, Kristen; Orro, Alessandro; Marsico, Stefania; Otjacques, Benoit; Laudanna, Carlo; Milanesi, Luciano; Dolcetti, Riccardo; Fiorentini, Simona; Lu, Wuyuan; Caruso, Arnaldo
A single amino acid substitution confers B-cell clonogenic activity to the HIV-1 matrix protein p17
(2017) in Scientific reports (Nature Publishing Group)
Spinelli, Chiara Carmela; Carrizzo, Albino; Ferrario, Anna; Villa, Francesco; Damato, Antonio; Ambrosio, Mariateresa; Madonna, Michele; Frati, Giacomo; Fucile, Sergio; Sciaccalunga, Miriam; Capunzo, Mario; Cali, Gaetano; Milanesi, Luciano; Maciag, Anna; Puca, Annibale Alessandro; Vecchione, Carmine
LAV-BPIFB4 isoform modulates eNOS signaling through Ca2+/PKC-alpha dependent mechanism.
(2017) in Cardiovascular research
Di Maio, Velia C.; Cento, Valeria; Lenci, Ilaria; Aragri, Marianna; Rossi, Piera; Barbaliscia, Silvia; Melis, Michela; Verucchi, Gabriella; Magni, Carlo F.; Teti, Elisabetta; Bertoli, Ada; Antonucci, FrancescoPaolo; Bellocchi, Maria C.; Micheli, Valeria; Masetti, Chiara; Landonio, Simona; Francioso, Simona; Santopaolo, Francesco; Pellicelli, Adriano M.; Calvaruso, Vincenza; Gianserra, Laura; Siciliano, Massimo; Romagnoli, Dante; Cozzolongo, Raffaele; Grieco, Antonio; Vecchiet, Jacopo; Morisco, Filomena; Merli, Manuela; Brancaccio, Giuseppina; Di Biagio, Antonio; Loggi, Elisabetta; Mastroianni, Claudio M.; Palitti, Valeria Pace; Tarquini, Pierluigi; Puoti, Massimo; Taliani, Gloria; Sarmati, Loredana; Picciotto, Antonino; Vullo, Vincenzo; Caporaso, Nicola; Paoloni, Maurizio; Pasquazzi, Caterina; Rizzardini, Giuliano; Parruti, Giustino; Craxi, Antonio; Babudieri, Sergio; Andreoni, Massimo; Angelico, Mario; Perno, Carlo F.; Ceccherini-Silberstein, Francesca; Mariani R, Iapadre N, Grimaldi ...
Multiclass HCV resistance to direct-acting antiviral failure in real-life patients advocates for tailored second-line therapies
(2017) in Liver international (Print)
Spinozzi G1, Calabria A1, Brasca S1, Beretta S2, Merelli I3, Milanesi L3, Montini E4.
VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites
(2017) in BMC bioinformatics
Tarallo R.; Giurato G.; Bruno G.; Ravo M.; Rizzo F.; Salvati A.; Ricciardi L.; Marchese G.; Cordella A.; Rocco T.; Gigantino V.; Pierri B.; Cimmino G.; Milanesi L.; Ambrosino C.; Nyman T.A.; Nassa G.; Weisz A.
The nuclear receptor ER? engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading
(2017) in Genome biology (Print)
Mosca, Ettore; Bersanelli, Matteo; Gnocchi, Matteo; Moscatelli, Marco; Castellani, Gastone; Milanesi, Luciano; Mezzelani, Alessandra
Network Diffusion-Based Prioritization of Autism Risk Genes Identifies Significantly Connected Gene Modules
(2017) in Frontiers in genetics
Vecchione, Carmine; Villa, Francesco; Carrizzo, Albino; Spinelli, Chiara Carmela; Damato, Antonio; Ambrosio, Mariateresa; Ferrario, Anna; Madonna, Michele; Uccellatore, Annachiara; Lupini, Silvia; Maciag, Anna; Ryskalin, Larisa; Milanesi, Luciano; Frati, Giacomo; Sciarretta, Sebastiano; Bellazzi, Riccardo; Genovese, Stefano; Ceriello, Antonio; Auricchio, Alberto; Malovini, Alberto; Puca, Annibale Alessandro
A rare genetic variant of BPIFB4 predisposes to high blood pressure via impairment of nitric oxide signaling
(2017) in Scientific reports (Nature Publishing Group)
S. Beretta, L. Morganti, E. Corni, A. Ferraro, D. Cesini, D. D'Agostino, L. Milanesi, and I. Merelli
Low-power architectures for miRNA-target genome wide analysis
(2017) 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, Saint Petersburg, 06-08/03, 2017
Di Nanni N, Gnocchi M, Moscatelli M, Milanesi L, Mosca E
Network diffusion on multiple-layers: current approaches and integrative analysis of Rheumatoid Arthritis data
(2017) Methods, tools & platforms for Personalized Medicine in the Big Data Era - NETTAB 2017 Workshop Collection, 16-18/10/2017
Gnocchi M, Moscatelli M, Manconi A, Milanesi L
Web infrastructure for the management of the "bbmri.it" Italian Biobank Network
(2017) 14th Annual Meeting of the Bioinformatics Italian Society, Cagliari, 5-7 Luglio 2017
Manconi A, Moscatelli M, Gnocchi M and Milanesi L
Pre-processing of high-throughput sequencing data
(2017) 14th Annual Meeting of the Bioinformatics Italian Society -, Cagliari, 5-7 Luglio 2017
Mezzelani A, Cupaioli F, Sicurello F, Milanesi L.
Epigenetic-immune-microbiota contribution to neural regeneration after spinal cord injury: an overview.
(2017) SRSI - Nature Conference "Regeneration", Milano, Italia, 16/11/2017 - 18/11/2017
Mezzelani A, Cupaioli F, Sicurello F, Milanesi L.
Epigenetic-immune-microbiota contribution to neural regeneration after spinal cord injury: an overview
(2017) International Spinal Cord Repair - ISCORE 2017, Barcellona, Spagna, 03/11/2017 - 04/11/2017
Carisetti M, Moscatelli M, Milanesi L, Mezzelani A, Chiappori F
Effect of gliadin modification on CXCR3 binding
(2017) CDDD 2017, IFOM, Milano, 16-17/11/2017
Carisetti M(1,2), Moscatelli M(2), Longeri M(1), Milanesi L(2), Mezzelani A(2), Chiappori F(2)
Identification of molecular determinants of CXCR3-gliadin-mediated triggering of intestinal permeability
(2017) BITS 2017, Cagliari, 05-07/7/2017
Mezzelani A, Cupaioli F, Sicurello F, Milanesi L.
Bioinformatic Integration of "Omics" Data to Evaluate and Improve Laser Induced Neuroregeneration after SCI: an Overview
(2017) 29th international medical congress, Laser Florence 2017, Firenze, 9/11/2017-11/11/2017
Matteo Gnocchi, Marco Moscatelli e Luciano Milanesi
Aggiornamento del portale per il nodo nazionale BBMRI.IT
(2017)
E. Mosca1, M. Bersanelli2, R. Alfieri1,3, M. Landini1, N. Galluccio1, M. E. Raggi4, L. Villa4, M. Moleteni4, A. Bonfanti4, S. Camposeo5, A. Massagli5, G. Castellani2, F. Ciceri4, A. Marabotti4,6, L. Milanesi1, A. Mezzelani1
An integrative analysis of genomic studies for the identification of the molecular network regions associated with autism spectrum disorders
(2016) European Human Genetics Conference 2016, 21-24/05/2016
Moscatelli M.; Manconi A.; Gnocchi M.; Milanesi L.
An infrastructure for disease prevention and precision medicine
(2016) KDWeb2016 - Knowledge Discovery on the We, 8-10 Settembre 2016
Tordini, Fabio; Aldinucci, Marco; Milanesi, Luciano; Lio, Pietro; Merelli, Ivan
The Genome Conformation As an Integrator of Multi-Omic Data: Thie Example of Damage Spreading in Cancer
(2016) in Frontiers in genetics
Di Maio, V. C.; Cento, V.; Di Paolo, D.; Aragri, M.; De Leonardis, F.; Tontodonati, M.; Micheli, V.; Bellocchi, M. C.; Antonucci, F. P.; Bertoli, A.; Lenci, I.; Milana, M.; Gianserra, L.; Melis, M.; Di Biagio, A.; Sarrecchia, C.; Sarmati, L.; Landonio, S.; Francioso, S.; Lambiase, L.; Nicolini, L. A.; Marenco, S.; Nosotti, L.; Giannelli, V.; Siciliano, M.; Romagnoli, D.; Pellicelli, A.; Vecchiet, J.; Magni, C. F.; Babudieri, S.; Mura, M. S.; Taliani, G.; Mastroianni, C.; Vespasiani-Gentilucci, U.; Romano, M.; Morisco, F.; Gasbarrini, A.; Vullo, V.; Bruno, S.; Baiguera, C.; Pasquazzi, C.; Tisone, G.; Picciotto, A.; Andreoni, M.; Parruti, G.; Rizzardini, G.; Angelico, M.; Perno, C. F.; Ceccherini-Silberstein, F.Mariani R, Paoloni M, Iapadre N, Grimaldi A, Menzaghi B, Quirino T, Vecchiet J, Bruzzone B, De Maria A, Di Biagio A, Marenco S, Nicolini LA, Picciotto A, Viscoli C, Casinelli K, Monache MD, Lichtner M, Mastroianni C, Aghemo A, Bruno S, Cerrone M, Colombo M, Monforte AD, Danieli E,...
HCV NS3 sequencing as a reliable and clinically useful tool for the assessment of genotype and resistance mutations for clinical samples with different HCV-RNA levels
(2016) in Journal of antimicrobial chemotherapy (Print)
Manconi, Andrea; Moscatelli, Marco; Armano, Giuliano; Gnocchi, Matteo; Orro, Alessandro; Milanesi, Luciano
Removing duplicate reads using graphics processing units
(2016) in BMC bioinformatics
Cappelletti, Martina; Fedi, Stefani; Zampolli, Jessica; Di Canito, Alessandra; D'Ursi, Pasqualina; Orro, Alessandro; Viti, Carlo; Milanesi, Luciano; Zannoni, Davide; Di Gennaro, Patrizia
Phenotype microarray analysis may unravel genetic determinants of the stress response by Rhodococcus aetherivorans BCP1 and Rhodococcus opacus R7
(2016) in Research in microbiology (Paris)
Landini, Martina; Merelli, Ivan; Raggi, M. Elisabetta; Galluccio, Nadia; Ciceri, Francesca; Bonfanti, Arianna; Camposeo, Serena; Massagli, Angelo; Villa, Laura; Salvi, Erika; Cusi, Daniele; Cusi, Daniele; Molteni, Massimo; Milanesi, Luciano; Marabotti, Anna; Marabotti, Anna; Mezzelani, Alessandra
Association analysis of noncoding variants in neuroligins 3 and 4X genes with autism spectrum disorder in an Italian cohort
(2016) in International journal of molecular sciences (Print)
Chiappori, Federica; Milanesi, Luciano; Merelli, Ivan
HPC analysis of multiple binding sites communication and allosteric modulations in drug design: The HSP case study
(2016) in Current drug targets (Print)
Kehler, James; Greco, Marianna; Martino, Valentina; Pachiappan, Manickam; Yokoe, Hiroko; Chen, Alice; Yang, Miranda; Auerbach, Jonathan; Jessee, Joel; Gotte, Martin; Milanesi, Luciano; Albertini, Alberto; Bellipanni, Gianfranco; Zucchi, Ileana; Reinbold, Rolland A; Giordano, Antonio
RNA-Generated and Gene-Edited Induced Pluripotent Stem Cells for Disease Modeling and Therapy.
(2016) in Journal of cellular physiology (Print)
Shavit, Yoli and Merelli, Ivan and Milanesi, Luciano and Lio', Pietro
How computer science can help in understanding the 3D genome architecture
(2016) in Briefings in bioinformatics
Castellani G.C.; Menichetti G.; Garagnani P.; Bacalini M.G.; Pirazzini C.; Franceschi C.; Collino S.; Sala C.; Remondini D.; Giampieri E.; Mosca E.; Bersanelli M.; Vitali S.; Do Valle I.F.; Lio P.; Milanesi L.
Systems medicine of inflammaging
(2016) in Briefings in bioinformatics
Bersanelli, Matteo; Mosca, Ettore; Remondini, Daniel; Castellani, Gastone; Milanesi, Luciano
Network diffusion-based analysis of high-throughput data for the detection of differentially enriched modules
(2016) in Scientific reports (Nature Publishing Group)
Alexandrova, Elena; Nassa, Giovanni; Corleone, Giacomo; Buzdin, Anton; Aliper, Alexander M.; Terekhanova, Nadezhda; Shepelin, Denis; Zhavoronkov, Alexander; Tamm, Michael; Milanesi, Luciano; Miglino, Nicola; Weisz, Alessandro; Borger, Pieter
Large-scale profiling of signalling pathways reveals an asthma specific signature in bronchial smooth muscle cells
(2016) in Oncotarget
D'Ursi, Pasqualina; Guariento, Sara; Trombetti, Gabriele; Orro, Alessandro; Cichero, Elena; Milanesi, Luciano; Fossa, Paola; Bruno, Olga
Further Insights in the Binding Mode of Selective Inhibitors to Human PDE4D Enzyme Combining Docking and Molecular Dynamics
(2016) in Molecular informatics (Print)
Cesana, Daniela; Gallina, Pierangela; Rudilosso, Laura; Calabria, Andrea; Spinozzi, Giulio; Merelli, Ivan; Milanesi, Luciano; Montini, Eugenio
Lentiviral Vectors with a Reduced Splicing Interference Potential Have a Significantly Improved Safety Profile In Vivo
(2016) in Molecular therapy (Print)
Rizzo, Francesca; Rinaldi, Antonio; Marchese, Giovanna; Coviello, Elena; Sellitto, Assunta; Cordella, Angela; Giurato, Giorgio; Nassa, Giovanni; Ravo, Maria; Tarallo, Roberta; Milanesi, Luciano; Destro, Anna; Torzilli, Guido; Roncalli, Massimo; Di Tommaso, Luca; Weisz, Alessandro
Specific patterns of PIWI-interacting small noncoding RNA expression in dysplastic liver nodules and hepatocellular carcinoma
(2016) in Oncotarget
D'Avila, Francesca; Meregalli, Mirella; Lupoli, Sara; Barcella, Matteo; Orro, Alessandro; De Santis, Francesca; Sitzia, Clementina; Farini, Andrea; D'Ursi, Pasqualina; Erratico, Silvia; Cristofani, Riccardo; Milanesi, Luciano; Braga, Daniele; Cusi, Daniele; Poletti, Angelo; Barlassina, Cristina; Torrente, Yvan
Exome sequencing identifies variants in two genes encoding the LIM-proteins NRAP and FHL1 in an Italian patient with BAG3 myofibrillar myopathy
(2016) in Journal of muscle research and cell motility
Kel, Ivan; Chang, Zisong; Galluccio, Nadia; Romeo, Margherita; Beretta, Stefano; Diomede, Luisa; Mezzelani, Alessandra; Milanesi, Luciano; Dieterich, Christoph; Merelli, Ivan
SPIRE, a modular pipeline for eQTL analysis of RNA-Seq data, reveals a regulatory hotspot controlling miRNA expression in C. elegans
(2016) in Molecular bioSystems (Print)
Chiappori, Federica; Mattiazzi, Luca; Milanesi, Luciano; Merelli, Ivan
A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the alpha B-Crystallin case study
(2016) in BMC bioinformatics
Milanesi, Luciano; Guffanti, Alessandro; Mauri, Giancarlo; Masseroli, Marco
BITS 2015: The annual meeting of the Italian Society of Bioinformatics
(2016) in BMC bioinformatics
Brullo, Chiara; Ricciarelli, Roberta; Prickaerts, Jos; Arancio, Ottavio; Massa, Matteo; Rotolo, Chiara; Romussi, Alessia; Rebosio, Claudia; Marengo, Barbara; Pronzato, Maria Adelaide; van Hagen, Britt T J; van Goethem, Nick P.; D'Ursi, Pasqualina; Orro, Alessandro; Milanesi, Luciano; Guariento, Sara; Cichero, Elena; Fossa, Paola; Fedele, Ernesto; Fedele, Ernesto; Bruno, Olga
New insights into selective PDE4D inhibitors: 3-(Cyclopentyloxy)-4-methoxybenzaldehyde O-(2-(2,6-dimethylmorpholino)-2-oxoethyl) oxime (GEBR-7b) structural development and promising activities to restore memory impairment
(2016) in European journal of medicinal chemistry
Bersanelli M.; Mosca E.; Remondini D.; Giampieri E.; Sala C.; Castellani G.; Milanesi L.
Methods for the integration of multi-omics data: Mathematical aspects
(2016) in BMC bioinformatics
F. Viti, M. Landini, A. Mezzelani, L. Petecchia, L. Milanesi, S. Scaglione
Osteogenic differentiation of MSC through calcium signaling activation: transcriptomics and functional analysis
(2016) in PloS one
Sala C.; Vitali S.; Giampieri E.; do Valle I.F.; Remondini D.; Garagnani P.; Bersanelli M.; Mosca E.; Milanesi L.; Castellani G.
Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data
(2016) in BMC bioinformatics
E. Ronchieri, D. D'Agostino, L. Milanesi, and I. Merelli
MicroRNA-target interaction: a parallel approach for computing pairing energy
(2016) 24th Euromicro International Conference on Parallel and Distributed, and Network-Based Processing 2016, Heraklion, Greece, February 17-19, 2016
Beretta, Stefano; Castelli, Mauro; Martinez, Yuliana; Munoz, Luis; Silva, Sara; Trujillo, Leonardo; Milanesi, Luciano; Merelli, Ivan
A Machine Learning Approach for the Integration of miRNA-target Predictions
(2016) PDP2016, Heraklion, Greece, 17-19 Feb. 2016
Federica CHIAPPORI, Matteo GNOCCHI, Luciano MILANESI, Alessandra MEZZELANI
Autism and intestinal permeability: bioinformatics selection of candidate genes target
(2016) BITS 2016, Salerno, 15-17/06/2016
Federica CHIAPPORI1, Luca MATTIAZZI1,2, Luciano MILANESI1, Ivan MERELLI1
Effect of serine phosphorylation on aB-Crystallin interface multimeric form
(2016) EMBO course "Molecular chaperones: From molecules to cells and misfolding diseases", Crete, 08-13/05/2015
Moscatelli M, Gnocchi M, Manconi A, Milanesi L
Big Data for Disease Prevention and Precision Medicine
(2016) 13th Annual Meeting of the Bioinformatics Italian Society, Fisciano (Salerno), 15-17 Giugno 2016
Manconi A, Moscatelli M, Gnocchi M, Armano G, Milanesi L
A GPU-based High Performance Computing Infrastructure for specialized NGS analyses
(2016) 13th Annual Meeting of the Bioinformatics Italian Society, Fisciano (Salerno), 15-17 Giugno 2016
Manconi A, Moscatelli M, Gnocchi M, Milanesi L
A standard-based HPC platform for genome annotation, analysis and visualization
(2016) NETTAB 2016, Roma, 25-26 Ottobre 2016
Federica Chiappori, Ivan Merelli, Luciano Milanesi
Allosteric modulation: the Hsp70 case study
(2016) Proteomics, Roma, 24-26/10/2016
M. Gnocchi, M. Moscatelli, L. Milanesi
Implementazione del Portale Collaborativo per il progetto Infrastrutturale Europeo BBMRI - Common Service For IT (BBMRI-CS)
(2016)
Ettore Mosca, Matteo Bersanelli and Luciano Milanesi
dmfind - Network diffusion-based analysis of omics for the identifcation of differentially enriched modules.
(2016)
Gnocchi M, Moscatelli M, Alfieri R, Manconi A, Milanesi L
HIRMA: Web portal for the management of hepato-carcinoma clinical data
(2015) Twelfth Annual Meeting of the Bioinformatics Italian Society, 3-5 Giugno 2015
Manconi A, Armano G, Orro A, Gnocchi M, Moscatelli M, Milanesi L
Using GPUs to deal with bioinformatics challenges
(2015) Twelfth Annual Meeting of the Bioinformatics Italian Society, 3-5 Giugno 2015
Moscatelli M, Gnocchi M, Manconi A, Mosca E, Milanesi L
OmicStudio: a framework for multi-omics data analysis
(2015) Twelfth Annual Meeting of the Bioinformatics Italian Society, Milan, June 3-5, 2015
Sforza, Daniele; Lenci, Ilaria; Manuelli, Matteo; Cento, Valeria; Rendina, Maria; Maria, Francesca Donato; Martina, Milana; Marianna, Aragri; Velia, Chiara Di Maio; Amal, Abedrabbo; Federico, Malinverno; Sara, Monico; Maria, Laura Ponti; Roberta, Canu; Roberto, Ganga; Milanesi, Luciano; Di Leo, Alfredo; Perno, Carlo Federico; Ceccherini-Silberstein, Francesca; Colombo, Massimo; Angelico, Mario; Tisone, Giuseppe
SLOW ACHIEVEMENT OF HCV-RNA UNDETECTABILITY IN CIRRHOTIC PATIENTS TREATED WITH SOFOSBUVIR plus RIBAVIRIN: POSSIBLE CLINICAL IMPLICATIONS IN THE LIVER TRANSPLANT LIST MANAGEMENT
(2015) in Transplant international
Cozzi, Paolo; Milanesi, Luciano; Bernardi, Giorgio
Segmenting the Human Genome into Isochores
(2015) in Evolutionary bioinformatics online
Villa F.; Malovini A.; Carrizzo A.; Spinelli C.C.; Ferrario A.; Maciag A.; Madonna M.; Bellazzi R.; Milanesi L.; Vecchione C.; Puca A.A.
Serum BPIFB4 levels classify health status in long-living individuals
(2015) in Immunity & ageing
Manca, Emanuele; Manconi, Andrea; Orro, Alessandro; Armano, Giuliano; Milanesi, Luciano
CUDA-quicksort: An improved GPU-based implementation of quicksort
(2015) in Concurrency and computation
Manconi, Andrea; Manca, Emanuele; Moscatelli, Marco; Gnocchi, Matteo; Orro, Alessandro; Armano, Giuliano; Milanesi, Luciano
G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.
(2015) in Frontiers in Bioengineering and Biotechnology
Kannan, Sivakumar; Chernikova, Diana; Rogozin, Igor B; Poliakov, Eugenia; Managadze, David; Koonin, Eugene V; Milanesi, Luciano
Transposable Element Insertions in Long Intergenic Non-Coding RNA Genes.
(2015) in Frontiers in Bioengineering and Biotechnology
Orro, Alessandro; Cappelletti, Martina; D'Ursi, Pasqualina; Milanesi, Luciano; Di Canito, Alessandra; Zampolli, Jessica; Collina, Elena; Decorosi, Francesca; Viti, Carlo; Fedi, Stefano; Presentato, Alessandro; Zannoni, Davide; Di Gennaro, Patrizia
Genome and Phenotype Microarray Analyses of Rhodococcus sp BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental Relevance
(2015) in PloS one
Chiappori, Federica; Fumian, Marco; Milanesi, Luciano; Merelli, Ivan
DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70
(2015) in PloS one
Merelli I, Tordini F, Drocco M, Aldinucci M, Liò P and Milanesi L
Integrating multi-omic features exploiting Chromosome Conformation Capture data
(2015) in Frontiers in genetics
Mezzelani A, Landini M, Facchiano F, Raggi ME, Villa L, Molteni M, De Santis B, Brera C, Caroli AM, Milanesi L, Marabotti A.
Environment, dysbiosis, immunity and sex-specific susceptibility: A translational hypothesis for regressive autism pathogenesis.
(2015) in Nutritional neuroscience (Online)
Mezzelani A, Raggi ME, Marabotti A, Milanesi L.
Ochratoxin A as possible factor trigging autism and its male prevalence via epigenetic mechanism.
(2015) in Nutritional neuroscience (Online)
Pasqualina D'Ursi a*, Alessandro Orro a, Giulia Morra b, Marco Moscatelli ac, Gabriele Trombetti a, Luciano Milanesi a & Ermanna Rovida d*
Molecular dynamics and docking simulation of a natural variant of Activated Protein C with impaired protease activity: implications for integrin-mediated antiseptic function.
(2015) in Journal of biomolecular structure and dynamics (Online)
I. Lenci, V. Cento, M. Rendina, M.F. Donato, M. Milana, D. Sforza, M. Manuelli, M. Aragri, V.C. Di Maio, A. Abedrabbo, A. Castellaneta, F. Malinverno, S. Monico, M.L. Ponti, R. Canu, R. Ganga, R. Alfieri, L. Milanesi, A. Di Leo, G. Tisone, C.F. Perno, F. Ceccherini-Silberstein, M. Colombo, M. Angelico
Slow achievement of HCV-RNA undetectability in cirrhotic patients treated with sofosbuvir+ribavirin: possible clinical implications in the liver transplant list management
(2015) 48th A.I.S.F. - Italian Association for the Study of the Liver, Roma, 2015
V. Cento, M.F. Donato, I. Lenci, M. Rendina, V.C. Di Maio, M. Milana, S. Monico, M. Aragri, R. Alfieri, A. Abedrabbo, D. Sforza, M. Manuelli, L. Mameli, M.C. Sorbo, R. Canu, M.L. Ponti, C. Chialà, F. Malinverno, S. Marenco, L. Milanesi, A. Picciotto, G. Rossi, A. Di Leo, G. Tisone, F. Zamboni, R. Ganga, M. Colombo, C.F. Perno1, M. Angelico, F. Ceccherini-Silberstein
Slow HCV kinetics following Sofosbuvir + Ribavirin administration in real-life setting of liver transplant recipients with severe recurrent hepatitis C
(2015) EASL - The international liver congress, Vienna, 2015
V. Cento, V. Calvaruso, S. Marenco, R. Alfieri, M. Aragri, F.P. Antonucci, V.C. Di Maio, S. Petta, A. Mazzola, L. Milanesi, A. Picciotto, A. Craxì, C.F. Perno, F. Ceccherini-Silberstein,
Early-phase hcv kinetics and role of pre-existing resistance in cirrhotic or interferon-insensitive patients on daclatasvir plus asunaprevir
(2015) EASL - The international liver congress, Vienna, 2015
Roberta Alfieri, Maria Mercedes Santoro, Matteo Gnocchi, Marco Moscatelli, Osvaldo Carpina, Cristina Vischi, Claudia Pisano, Valentina De Murtas, Ennio Polill, Francesco Paolo Antonucci, Ivana Maida, Pierluigi Tarquini, Giovanni Garrucciu, Franco Bandiera, Dante Di Giammartino, Diletta Laccabue, Andre Olivani, Vanni Borghi, Tiziana Quirino, Ilaria Lenci, Giuseppe Tisone, Mario Angelico, Cristina Mussini, Giuliano Rizzardini, Massimo Temponi, Giustino Parruti, Maria Stella Mura, Francesca Ceccherini-Silberstein, Carlo-Federico Perno, Luciano Milanesi
A Web Portal for Clinical and Genotype Data Management for the Study of Hepatocellular Carcinoma; Workshop "Innovation in HIV and Viral Hepatitis
(2015) Beyond viral undetectability: new frontiers and strategies, Milano, 26-27 gennaio 2015
Tordini, Fabio; Drocco, Maurizio; Merelli, Ivan; Milanesi, Luciano; Liò, Pietro; Aldinucci, Marco
NuChart-II: A graph-based approach for analysis and interpretation of Hi-C data
(2015) cibb2015, Cambridge
Tordini, Fabio; Drocco, Maurizio; Misale, Claudia; Milanesi, Luciano; Lio, Pietro; Merelli, Ivan; Aldinucci, Marco
Parallel Exploration of the Nuclear Chromosome Conformation with NuChart-II
(2015) 23rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing, Turku, Finland, 4-6 March 2015
Chiappori F1, Pucciarelli S2, Priyan K2, Miceli C2, Milanesi L1
Thermal and ionic effect on Euplotes focardii superoxide dismutase structure
(2015) BITS 2015, Milano, 03-05/06/2015
Ettore Mosca (1), Matteo Bersanelli (2), Gastone Castellani(2), Luciano Milanesi(1)
Identification of disease modules through network diffusion and integration of genome-wide datasets.
(2015) Twelfth Annual Meeting of the Bioinformatics Italian Society, 03-05/06/2015
Roberta Alfieri, Ettore Mosca, Luciano Milanesi
Propagation of hepatitis C virus effects throughout the host interactome reveals liver expression variations in the network proximity to Hepatitis C virus targets.
(2015) Twelfth Annual Meeting of the Bioinformatics Italian Society, 3-5/06/ 2015
PIRONA R., MANCONI A., MILANESI L., VIOTTI A., LAURIA M
NATURAL EPIGENETIC VARIATION IN MAIZE
(2015) Joint Congress SIBV-SIGA, Milan, 8/11 September, 2015
Ettore Mosca, Alessandra Mezzelani, Luciano Milanesi
Network analysis of genetic variations in Autism Spectrum Disorders
(2015) Bringing Maths to Life, 19-21/10/2015
V. Cento, M.F. Donato, I. Lenci, M. Rendina, V.C. Di Maio, M. Milana, S. Monico, M. Aragri, R. Alfieri, A. Abedrabbo, D. Sforza, M. Manuelli, L. Mameli, M.C. Sorbo, R. Canu, M.L. Ponti, C. Chialà, F. Malinverno, S. Marenco, L. Milanesi, A. Picciotto, G. Rossi, A. Di Leo, G. Tisone, F. Zamboni, R. Ganga, M. Colombo, C.F. Perno1, M. Angelico, F. Ceccherini-Silberstein
Slow HCV kinetics following Sofosbuvir + Ribavirin administration in real-life setting of liver transplant recipients with severe recurrent hepatitis C
(2015) Workshop on Innovation in HIV and Viral Hepatitis - Beyond viral undetectability: new frontiers and strategies, Milano, 26-27 gennaio 2013
Landini M1, Mezzelani A1, Merelli I1, Raggi ME2, Ciceri F2, Villa L2, Molteni M2, Marabotti A2-3, Milanesi L1
Three SNP aplotypes in neuroligins may correlate to autism susceptibility
(2014) European Human Genetics Conference, Milano, 31 maggio-3 giugno 2014
Manconi, Andrea; Orro, Alessandro; Manca, Emanuele; Armano, Giuliano; Milanesi, Luciano
A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units.
(2014) in BMC bioinformatics
D. D'Agostino, A. Clematis , S. Decherchi , W. Rocchia , L. Milanesi, and I. Merelli
CUDA accelerated molecular surface generation
(2014) in Concurrency and computation
Viti, Federica; Scaglione, Silvia; Orro, Alessandro; Milanesi, Luciano
Guidelines for managing data and processes in bone and cartilage tissue engineering
(2014) in BMC bioinformatics
Manconi, Andrea; Orro, Alessandro; Manca, Emanuele; Armano, Giuliano; Milanesi, Luciano
A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units
(2014) in BMC bioinformatics
Manconi, Andrea; Orro, Alessandro; Manca, Emanuele; Armano, Giuliano; Milanesi, Luciano
GPU-BSM: A GPU-Based Tool to Map Bisulfite-Treated Reads
(2014) in PloS one
D. D'Agostino, G. Pasquale, A. Clematis, C. Maj, E. Mosca, L. Milanesi, and I. Merelli
Parallel solutions for voxel-based simulations of reaction-diffusion systems
(2014) in BioMed Research International (Online)
Mosca, Ettore; Alfieri, Roberta; Milanesi, Luciano
Diffusion of Information throughout the Host Interactome Reveals Gene Expression Variations in Network Proximity to Target Proteins of Hepatitis C Virus.
(2014) in PloS one
Di Gennaro, P; Zampolli, J; Presti, I; Cappelletti, M; D'Ursi, P; Orro, A; Mezzelani, A; Milanesi, L
Genome Sequence of Rhodococcus opacus Strain R7, a Biodegrader of Mono- and Polycyclic Aromatic Hydrocarbons.
(2014) in genome announcements
Merelli, Ivan; Mosca, Ettore; Cesini, Daniele; Ronchieri, Elisabetta; Milanesi, Luciano
Evaluating mixed HTC/cloud approaches for parameter sweep applications in systems biology
(2014) IWBBIO2014, Granada, 7 - 9 April 2014
G. Pasquale, C. Maj, A. Clematis, E. Mosca, L. Milanesi, I. Merelli, and D. D'Agostino
A CUDA implementation of the spatial TAU-leaping in crowded compartments (STAUCC) simulator
(2014) 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2014),, Torino, Italia, 12-14 Febbraio 2014
E. Ronchieri, D. Cesini, D. Dagostino, V. Ciaschini, G.D. Torre, P. Cozzi, D. Salomoni, A. Clematis, L. Milanesi, and I.Merelli
The WNoDeS cloud virtualization framework: a macromolecular surface analysis application case study
(2014) 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2014),, Torino, Italia, 12-14 Febbraio 2014
Fernandes, Pedro L.; Liò, Pietro; Milanesi, Luciano
Challenges in building an e-health infrastructure for P5 medicine
(2014) International Conference on E-Health, Lisbon, Portugal, 17 - 19 July 2014
Fernandes, Pedro L.; Lio, Pietro; Milanesi, Luciano
CHALLENGES IN BUILDING AN E-HEALTH INFRASTRUCTURE FOR P5 MEDICINE
(2014) 6th International Conference on e-Health 2014, Lisbon, Portugal, 17 - 19 July 2014
G. Pasquale, E. Mosca, I. Merelli, L. Milanesi, A. Clematis, and D. D'Agostino
A full fine-grained parallelization of the multi-objective evolutionary approach NSGA-II for the CUDA architecture
(2014) BITS Annual Meeting 2014, Roma, Italia, 26-28 Febbraio 2014
Chiappori F, Milanesi L, Merelli I.
Protein threading modeling approaches for describing the structural conformation of the Calcium-sensing receptor cytoplasmic C-terminal portion.
(2014) BITS, Roma, 2014
Italiani, P., E. Mosca, R. Alfieri, L. Milanesi, and D. Boraschi.
Monocyte-based models for describing the human inflammatory response in physiological and pathological conditions.
(2014) The 2014 Conference of the Federation of the African Immunological Societies (FAIS), Nairobi (Kenya), November 30-December 4, 2014
Italiani, P., E. Mosca, R. Alfieri, L. Milanesi, and D. Boraschi.
Modulation of IL-1 family cytokines and receptors during the acute and chronic inflammatory response of human monocytes.
(2014) The 2014 Innate Immunity Summit, London (UK), November 10-12, 2014
Boraschi, D., E. Mosca, R. Alfieri, L. Milanesi, and P. Italiani
IL-1 family cytokines and monocytes/macrophages in the regulation of inflammation.
(2014) The 2014 Fall Conference of the Korean Association of Immunologists (KAI), Seoul (Korea), November 6-7, 2014
Mezzelani A1, Landini M1, Galluccio N1, Merelli I1, Raggi ME2§, Ciceri F2§, Villa L2§, Molteni M2§, Bonfanti A2§, Massagli A2*, Camposeo S2*, Marabotti A2§-3, Milanesi L1
Sex-specific neurotoxicity as possible cause of regressive autism
(2014) Toxicology and Applied Pharmacology, Chicago, 20-22 ottobre 2014
Matteo Bersanelli(1), Ettore Mosca(2), Gastone Castellani(1) and Luciano Milanesi(2)
Methods for Integrating Multi-omics Data: Mathematical Aspects.
(2014) Bringing Maths to Life, 27-29/10/2014
Cichero E, Espinoza S, Franchini S, D'Ursi P, Raul R. Gainetdinov R. R, Brasili L, Milanesi L and Fossa P.
Insights into the structure of the Human TAAR5 receptor: a computational study.
(2014) Computationally Driven Drug Discovery Meeting CDDD 3° Meeting, Verona, 4-6 marzo 2014
Matteo Gnocchi, Roberta Alfieri, Alessandro Orro, Maria Mercedes Santoro, Ettore Mosca, Daniele Armenia, Francesca Ceccherini-Silberstein, Carlo Federico Perno, Luciano Milanesii
A WEB PORTAL FOR CLINICAL AND GENOTYPE DATA MANAGEMENT FOR THE STUDY OF HEPATOCELLULAR CARCINOMA
(2013) Bioinformatics Italian Society (BITS), Udine, 2013
Mezzelani A, Landini M, Facchiano F, Raggi ME, Villa L, Molteni M, De Santis B, Brera c, Caroli AM, Milanesi L, Marabotti A
Immunity-Dysbiosis-Environment and Autism susceptibility: "IDEAS" for autism development
(2013) Fodoomics, Cesena, 22-24 maggio 2013
Lucia Bianchi, Pedro Fernandes, Matteo Gnocchi, Pietro Lio and Luciano Milanesi
IT challenges for Big Data and public health policies in bioP4medicine
(2013) Barcelona developer Conference 2013, Barcellona, 8-10 novembre 2013
Alfieri Roberta, Gnocchi Matteo, Moscatelli Marco, Mosca Ettore, Milanesi Luciano.
A Web Portal for Hepatocellular Carcinoma study data management.
(2013) 1° Bioinformatics, computational Biology and System Biology lombardy day BioLom 2013, Milano, 27 novembre 2013
D'Ursi P., Orro A., Trombetti G., Milanesi L.
Long Molecular Dynamics on GPUs infrastructure establish key residues and the binding mode of the inhibitors of the phosphodiesterase superfamily.
(2013) 1° Bioinformatics, computational Biology and System Biology lombardy day BioLom 2013, Milano, 27 novembre 2013
Pizzi F, A M Caroli, M Landini, N Galluccio, A Mezzelani, L Milanesi
Endangered Animals: from biotechnologies to digital preservation
(2013) in Natural science (Irvine, Calif. Online)
Cappelletti, M; Di Gennaro, P; D'Ursi, P; Orro, A; Mezzelani, A; Landini, M; Fedi, S; Frascari, D; Presentato, A; Zannoni, D; Milanesi, L
Genome Sequence of Rhodococcus sp. Strain BCP1, a Biodegrader of Alkanes and Chlorinated Compounds.
(2013) in genome announcements
Pucciarelli, Sandra; Chiappori, Federica; Sparvoli, Daniela; Milanesi, Luciano; Miceli, Cristina; Melki, Ronald
Tubulin folding: the special case of a beta-tubulin isotype from the Antarctic psychrophilic ciliate Euplotes focardii
(2013) in Polar biology (Print)
Mosca, Ettore; Milanesi, Luciano
Network-based analysis of omics with multi-objective optimization
(2013) in Molecular bioSystems (Print)
Cichero, Elena; D'Ursi, Pasqualina; Moscatelli, Marco; Bruno, Olga; Orro, Alessandro; Rotolo, Chiara; Milanesi, Luciano; Fossa, Paola
Homology Modeling, Docking Studies and Molecular Dynamic Simulations Using Graphical Processing Unit Architecture to Probe the Type-11 Phosphodiesterase Catalytic Site: A Computational Approach for the Rational Design of Selective Inhibitors
(2013) in Chemical biology & drug design (Print)
Merelli, Ivan; Lio, Pietro; Milanesi, Luciano
NuChart: An R Package to Study Gene Spatial Neighbourhoods with Multi-Omics Annotations
(2013) in PloS one
Maj, Carlo; Mosca, Ettore; Merelli, Ivan; Mauri, Giancarlo; Milanesi, Luciano
SENSITIVITY ANALYSIS FOR STUDYING THE RELATION BETWEEN BIOCHEMICAL REACTIONS AND METABOLIC PHENOTYPES
(2013) in Journal of bioinformatics and computational biology (Print)
Vezzoli, Giuseppe; Terranegra, Annalisa; Aloia, Andrea; Arcidiacono, Teresa; Milanesi, Luciano; Mosca, Ettore; Mingione, Alessandra; Spotti, Donatella; Cusi, Daniele; Hou, Jianghui; Hendy, Geoffrey N.; Soldati, Laura
Decreased Transcriptional Activity of Calcium-sensing receptor Gene Promoter 1 Is Associated With Calcium Nephrolithiasis
(2013) in The Journal of clinical endocrinology and metabolism
Chiappori, Federica; Merelli, Ivan; Milanesi, Luciano; Marabotti, Anna
Static and dynamic interactions between GALK enzyme and known inhibitors: Guidelines to design new drugs for galactosemic patients
(2013) in European journal of medicinal chemistry
D. D'Agostino, A. Clematis, A. Quarati, D. Cesini, F. Chiappori, L. Milanesi, and I. Merelli
Cloud infrastructures for in silico drug discovery: economic and practical aspects
(2013) in BioMed Research International (Online)
Longeri M, Ferrari P, Knafelz P, Mezzelani A, Marabotti A, Milanesi L, Pertica G, Polli M, Brambilla PG, Kittleson M, Lyons LA, Porciello F.
Myosin-Binding Protein C DNA Variants in Domestic Cats (A31P, A74T, R820W) and their Association with Hypertrophic Cardiomyopathy
(2013) in Journal of veterinary internal medicine
Bugatti A, Giagulli C, Urbinati C, Caccuri F, Chiodelli P, Oreste P, Fiorentini S, Orro A, Milanesi L, D'Ursi P, Caruso A, Rusnati M.
Molecular interaction studies of HIV-1 matrix protein p17 and heparin: identification of the heparin-binding motif of p17 as a target for the development of multitarget antagonists.
(2013) in The Journal of biological chemistry (Print)
Merelli, Ivan; Calabria, Andrea; Cozzi, Paolo; Viti, Federica; Mosca, Ettore; Milanesi, Luciano
SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS
(2013) in BMC bioinformatics
Bocchio-Chiavetto, Luisella; Maffioletti, Elisabetta; Bettinsoli, Paola; Giovannini, Caterina; Bignotti, Stefano; Tardito, Daniela; Corrada, Dario; Milanesi, Luciano; Gennarelli, Massimo
Blood microRNA changes in depressed patients during antidepressant treatment
(2013) in European neuropsychopharmacology
E. Mosca, I. Merelli, L. Milanesi, A. Clematis, and D. D'Agostino
A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems
(2013) 2013 21st Euromicro International Conference on Parallel, Distributed, and Network-Based Processing PDP, Belfast, 27th February - 1st March 2013
Chiappori, Federica; Merelli, Ivan; Colombo, Giorgio; Milanesi, Luciano; Morra, Giulia
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations
(2013) Biophysical Society 57th annual meeting, Philadelphia, February 2-6, 2013
Moni, Mohammad Ali; Lio, Pietro; Milanesi, Luciano
Comparing Viral (HIV) and Bacterial (Staphylococcus aureus) Infection of the Bone Tissue
(2013) BIOINFORMATICS_2013 : is part of BIOSTEC, the International Joint Conference on Biomedical Engineering Systems and Technologies, Barcellona, Spain, 11-14 February
Alfieri R(1*), Mosca E(1*), Gnocchi M(1), Lio' P(2), Milanesi L(1)
Integration of transcriptional response and intermolecular interactions in the study of hepatitis C virus-associated liver carcinogenic process
(2013) 10° Annua meeting of the Bioinformatic Italian Society, Udine, 21-23 maggio 203
Moni, Mohammad Ali; Liò, Pietro; Milanesi, Luciano
Comparing viral (HIV) and bacterial (staphylococcus aureus) infection of the bone tissue
(2013) BIOINFORMATICS 2013, Barcellona, Spain, 11-14/ February/ 2013
Silvia Santoro1, Pasqualina D'Ursi1, Nadia Galluccio1, Martina Landini1, Alessandra Mezzelani1, Alessandro Orro1, John Hatton1, Matteo Gnocchi1, Andrea Manconi1 and Luciano Milanesi1*
Bioinformatics molecular dynamics and docking pipeline analysis for high-throughput genome analysis and drug discovery oriented to personalized pain therapy in non-responsive patients.
(2013) Front. Neuroinform. Conference, Stockholm, Sweden, 27-29 agosto 2013
Fumian M, Chiappori F, Merelli I, Milanesi L
Comparative analysis of the human Hsp70 and of the bacterial homolog DnaK for the identification of key differential interaction residues through Molecular Dynamics simulations
(2013) BITS, Udine, 2013
Ettore Mosca, Luciano Milanesi
mosub: an R Package for the Identification of Multi-Optimal Subnetworks
(2013)
Chiappori F., Merelli I., Colombo G., Milanesi L., Morra G.
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations
(2012) in PLOS computational biology (Online)
Chiappori, Federica; Pucciarelli, Sandra; Merelli, Ivan; Ballarini, Patrizia; Miceli, Cristina; Milanesi, Luciano
Structural thermal adaptation of beta-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii
(2012) in Proteins (Print)
A Orro, A Manconi, E Manca, G Armano, L Milanesi
G-SNPM-A GPU-based SNP mapping tool
(2012) in EMBnet journal
Mosca, Ettore; Barcella, Matteo; Alfieri, Roberta; Bevilacqua, Annamaria; Canti, Gianfranco; Milanesi, Luciano
Systems biology of the metabolic network regulated by the Akt pathway
(2012) in Biotechnology advances
Mosca, Ettore; Alfieri, Roberta; Maj, Carlo; Bevilacqua, Annamaria; Canti, Gianfranco; Milanesi, Luciano
Computational modeling of the metabolic States regulated by the kinase akt.
(2012) in Frontiers in physiology
Merelli I , Viti F , Milanesi L.
IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.
(2012) in BMC bioinformatics
Maojo, Victor; Fritts, Martin; Martin-Sanchez, Fernando; De la Iglesia, Diana; Cachau, Raul E.; Garcia-Remesal, Miguel; Crespo, Jose; Mitchell, Joyce A.; Anguita, Alberto; Baker, Nathan; Maria Barreiro, Jose; Benitez, Sonia E.; De la Calle, Guillermo; Facelli, Julio C.; Ghazal, Peter; Geissbuhler, Antoine; Gonzalez-Nilo, Fernando; Graf, Norbert; Grangeat, Pierre; Hermosilla, Isabel; Hussein, Rada; Kern, Josipa; Koch, Sabine; Legre, Yannick; Lopez-Alonso, Victoria; Lopez-Campos, Guillermo; Milanesi, Luciano; Moustakis, Vassilis; Munteanu, Cristian; Otero, Paula; Pazos, Alejandro; Perez-Rey, David; Potamias, George; Sanz, Ferran; Kulikowski, Casimir
Nanoinformatics: developing new computing applications for nanomedicine
(2012) in Computing (Wien, Print)
Mosca E., Alfieri R., Maj C., Bevilacqua A., Canti G., Milanesi L.
Computational Modelling of the Metabolic States Regulated by the Kinase Akt
(2012) in Frontiers in physiology
Manconi, Andrea; Vargiu, Eloisa; Armano, Giuliano; Milanesi, Luciano
Literature retrieval and mining in bioinformatics: state of the art and challenges.
(2012) in Advances in Bioinformatics (Print)
Maj C., Mosca E., Merelli I.,Mauri G., Milanesi L.
Sensitivity analysis for unveiling the relation between biochemical reaction and metabolics phenotypes.
(2012) in Journal of bioinformatics and computational biology (Print)
Viti F., Merelli I, Calabria A., Cozzi P., Mosca E.,Alfieri R., Milanesi L.
Ontology-based resources for bioinformatics analysis.
(2012) in International journal of metadata, semantics and ontologies (Online)
Salzano M, Marabotti A, Milanesi L, Facchiano A
Molecular investigations of the interaction between the ligand-binding domain of the human aryl-hydrocarbon receptor and its endogenous ligands and xenobiotics from dietary sources
(2012) in Biochemical and biophysical research communications (Print)
Facchiano A, Festa P, Marabotti A, Milanesi L, Musacchia F.
Solving biclustering with a GRASP-like metaheuristic: Two case-studies on gene expression analysis.
(2012) in Lecture notes in computer science
Tang M, Facchiano A, Rachamadugu R, Calderon F, Mao R, Milanesi L, Marabotti A, Lai K
Correlation assessment among clinical phenotypes, expression analysis and molecular modeling of 14 novel variations in the human galactose-1-phosphate uridylyltransferase gene.
(2012) in Human mutation
Merelli I, Viti F, Milanesi L
IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis
(2012) in BMC bioinformatics
D. D'Agostino, A. Clematis, A. Guffanti, L. Milanesi, and I. Merelli
A CUDA-based implementation of the SSAKE genomics application
(2012) 20th Euromicro Conference on Parallel, Distributed and network-based Processing (Euromicro-PDP'12), Garching, Germany, 15-17 February, 2012
F. Viti, I. Merelli, S. Scaglione, L. Milanesi
Bioinformatics approach for data management about bone cells grown on substitute materials
(2012) NETTAB workshop on Integrated Bio-Research
A Marabotti, M Landini, A Mezzelani, L Milanesi, ME Raggi
Identification of molecular targets for mycotoxins related to autism development
(2012) BITS, Catania, 2-4 maggio 2012
Chiappori F, Merelli I, Milanesi L, Marabotti A
The Analysis of Interactions Between Galk Enzyme and Known Inhibitors Suggests Guidelines to Develop New Drugs for Galactosemic Patients.
(2012) 3DSIG: Structural Bioinformatics and Computational Biophysics, Long Beach, 13-14 luglio 2012
Alfieri, R.; Bartocci, Ezio; Merelli, E.; Milanesi, Luciano
Modeling the cell cycle: From deterministic models to hybrid systems
(2011) in Biosystems (Amst. Print)
Malovini, Alberto; Illario, Maddalena; Iaccarino, Guido; Villa, Francesco; Ferrario, Anna; Roncarati, Roberta; Anselmi, Chiara Viviani; Novelli, Valeria; Cipolletta, Ersilia; Leggiero, Eleonora; Orro, Alessandro; Rusciano, Maria Rosaria; Milanesi, Luciano; Maione, Angela Serena; Condorelli, Gianluigi; Bellazzi, Riccardo; Puca, Annibale A.
Association Study on Long-Living Individuals from Southern Italy Identifies rs10491334 in the CAMKIV Gene That Regulates Survival Proteins
(2011) in Rejuvenation research
Merelli, Ivan; Pescini, Dario; Mosca, Ettore; Cazzaniga, Paolo; Maj, Carlo; Mauri, Giancarlo; Milanesi, Luciano
Grid Computing for Sensitivity Analysis of Stochastic Biological Models
(2011) in Lecture notes in computer science
I. Merelli, P. Cozzi, D. D'Agostino, A. Clematis and L. Milanesi
Image based surface matching algorithm oriented to structural biology
(2011) in IEEE/ACM transactions on computational biology and bioinformatics (Print)
Corrada, Dario; Viti, Federica; Merelli, Ivan; Battaglia, Cristina; Milanesi, Luciano
myMIR: a genome-wide microRNA targets identification and annotation tool
(2011) in Briefings in bioinformatics
Salzano M, Marabotti A, Milanesi L, Facchiano A.
Human aryl-hydrocarbon receptor and its interaction with dioxin and physiological ligands investigated by molecular modelling and docking simulations.
(2011) in Biochemical and biophysical research communications (Print)
Cichero E, Ligresti A, Allarà M, di Marzo V, Lazzati Z, D'Ursi P, Marabotti A, Milanesi L, Spallarossa A, Ranise A, Fossa P.
Homology modeling in tandem with 3D-QSAR analyses: a computational approach to depict the agonist binding site of the human CB2 receptor
(2011) in European journal of medicinal chemistry
Viti, Federica; Merelli, Ivan; Calabria, Andrea; Cozzi, Paolo; Mosca, Ettore; Alfieri, Roberta; Milanesi, Luciano
Ontology-based resources for bioinformatics analysis
(2011) in International journal of metadata, semantics and ontologies (Print)
Roberta ALFIERI1 , Carlo MAJ2, Ettore MOSCA1, Luciano MILANESI1
Studying calcium signalling in neurodegenerative diseases through a computational approach
(2011) Sysbiohealth Symposium, Bologna, 14-15 dicembre 2011
Alfieri R, Maj C, Mosca E, Milanesi L.
Understanding the molecular mechanisms of neurodegenerative diseases using a computational approach
(2011) Multiscale Modeling, Basilea, CH, 23-24 giugno 2011
Carlo Maj1,2, Ettore Mosca1,Ivan Merelli1 , Roberta Alfieri1, Dario Pescini3, Paolo Cazzaniga4, Giancarlo Mauri2, Luciano Milanesi1
Sensitivity analysis for inferring properties of deterministic and stochastic models
(2011) Sysbiohealth Symposium, Bologna, 14-15 dicembre 2011
Mosca E, Barcella M, Alfieri R, Bevilacqua A, Milanesi L,
Towards an integrative model of the metabolic network regulated by the PI3K/Akt metabolic pathway
(2011) 9th [BC]2 Basel Computational Biology Conference "Multiscale Modeling",, Basilea, CH, 23-24 giugno 2011
Mosca E, Alfieri R, Milanesi L
Modeling of the central metabolism regulated by Akt
(2011) Sysbiohealth Symposium 2011", Bologna, 14-15 diembre 2011
Mosca E.(1), Barcella M.(1), Alfieri R.(1), Bevilacqua A.(2,3), Milanesi L.(1)
Towards an integrative model of the PI3K/Akt metabolic effects
(2011) International Meeting on Computational Intelligence (CIBB), Gargano del Garda, 30 giugno-2 luglio 2011
Musacchia F, Marabotti A, Facchiano A, Milanesi L, Festa P
Biclustering of gene expression data based on GRASP-like algorithms
(2011) BITS2011 - VIII Annual Meeting of the Bioinformatics Italian Society, Pisa, Italy, 20-22 June 2011
Salzano M, Marabotti A, Milanesi L, Facchiano A
Investigating the physiological role of human aryl hydrocarbon receptor
(2011) BITS2011 VIII Annual Meeting of the Bioinformatics Italian Society
Dimitrio, Luna; Natalini, Roberto; Milanesi, Luciano
A MATHEMATICAL MODEL FOR THE ENHANCED CYTOPLASMIC TRANSPORT How to Get (Faster) to the Nucleus
(2011) BIOINFORMATICS is part of BIOSTEC, the International Joint Conference on Biomedical Engineering Systems and Technologies, Roma, 26-29 Gennaio 2011
Barbera, R.; Andronico, G.; Donvito, G.; Falzone, A.; Keijser, J. J.; La Rocca, G.; Milanesi, L.; Maggi, G. P.; Vicario, S.
A grid portal with robot certificates for bioinformatics phylogenetic analyses
(2011) IWPLS 2009, e-Science Institute, 15 South College Street, Edinburgh, 14-15 Novembre 2009
Chiappori F, Merelli I, Milanesi L, Marabotti A.
Computational Biology Strategy for the Development of Ligands of GALK Enzyme as Potential Drugs for People with Classical Galactosemia.
(2011) BITS, Pisa, 2011
D. D'Agostino, I. Merelli, R. L. Warren, A. Guffanti, L. Milanesi and A. Clematis
Parallelization of the SSAKE genomics application.
(2011) PDP 2011, Aya Napa, Cyprus
Romano, Paolo; Milanesi, Luciano
Complex Search, Ranks, and Biological Discovery: A User's Perspective
(2011) SeCO Workshop 2010, Como
Mosca, Ettore; Milanesi, Luciano
Modeling Biochemical Pathways
(2011) Springer Science and Business Media, New York (Stati Uniti d'America) in Mathematical Approaches to Polymer Sequence Analysis and Related Problems, 2011
Merelli, Ivan; Pescini, Dario; Mosca, Ettore; Cazzaniga, Paolo; Maj, Carlo; Mauri, Giancarlo; Milanesi, Luciano
Grid computing for sensitivity analysis of stochastic biological models
(2011) in , 2011
Population Stratification Analysis in Genome-Wide Association Studies
(2011)
Mosca, E.; Barcella, M.; Alfieri, R.; Bevilacqua, A.; Milanesi, L.
A systems biology approach for the identification of glycolysis key regulators in cancer cells
(2010) 14th International Biotechnology Symposium and Exhibition, 14-18/09/2010
Calabria, Andrea; Mosca, Ettore; Viti, Federica; Merelli, Ivan; Milanesi, Luciano
SNPRanker: a tool for identification and scoring of SNPs associated to target genes.
(2010) in Journal of integrative bioinformatics
Viti F.; Merelli I.; Timmermans M.; den Bakker M.; Beltrame F.; Riegman P.; Milanesi L.
Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study
(2010) in BMC bioinformatics
Calabria A., Di Pasquale D., Gnocchi M., Cozzi P., Orro A., Trombetti G., Milanesi L.
Grid Powered Genome Wide Studies On Atrial Flutter
(2010) in Journal of grid computing
Chiappori F; Merelli I; Milanesi L; Rovida E
Exploring the role of the phospholipid ligand in Endothelial Protein C Receptor: a molecular dynamics study
(2010) in Proteins (Print)
Calabria A., Di Pasquale D., Gnocchi M., Cozzi P.A., Orro A., Trombetti G.A., Milanesi L.
Grid Based Genome Wide Studies on Atrial Flutter.
(2010)
Mosca E., Barcella M., Alfieri R., Bevilacqua A., Milanesi L.
A systems biology approach for the identification of glycolysis key regulators in cancer cells
(2010) in Journal of biotechnology
Merelli I.; Guffanti A.; Fabbri M.; Cocito A.; Furia L.; Grazini U.; Bonnal R.J.; Milanesi L.; McBlane F.
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes
(2010) in Nucleic acids research
Mosca E.; Alfieri R.; Merelli I.; Viti F.; Calabria A.; Milanesi L.
A multilevel data integration resource for breast cancer study
(2010) in BMC systems biology
Vezzoli, Giuseppe; Terranegra, Annalisa; Arcidiacono, Teresa; Gambaro, Giovanni; Milanesi, Luciano; Mosca, Ettore; Soldati, Laura
Calcium kidney stones are associated with a haplotype of the calcium-sensing receptor gene regulatory region
(2010) in Nephrology, dialysis, transplantation (Print)
Zironi, Isabella; Gaibani, Paolo; Remondini, Daniel; Salvioli, Stefano; Altilia, Serena; Pierini, Michela; Aicardi, Giorgio; Verondini, Ettore; Milanesi, Luciano; Bersani, Ferdinando; Gravina, Silvia; Roninson, Igor B.; Franceschi, Claudio; Castellani, Gastone
Molecular remodeling of potassium channels in fibroblasts from centenarians: A marker of longevity?
(2010) in Mechanisms of ageing and development (Print)
Lazzati, Zelda; D'Ursi, Pasqualina; Orro, Alessandro; Bolzacchini, Ezio; Milanesi, Luciano
Nuclear Receptors Database for predictive toxicity of EDC
(2010) in Journal of biotechnology
Federica Torri; Anna Akelai; Sara Lupoli; Manuela Sironi; Daniela Amann-Zalcenstein; Matteo Fumagalli; Chiara Dal Fiume; Edna Ben-Asher; Kyra Kanyas; Rachele Cagliani; Paolo Cozzi; Gabriele Trombetti; Luisa Strik Lievers; Erika Salvi; Alessandro Orro; Jacques S. Beckmann; Doron Lancet; Yoav Kohn; Luciano Milanesi; Richard B. Ebstein; Bernard Lerer; Fabio Macciardi
Fine mapping of AHI1 as a schizophrenia susceptibility gene: from association to evolutionary evidence
(2010) in The FASEB journal
Mosca E, Cocola C, Sabour D, Pelucchi P, Bertalot G, Palumbo O, Carella M, Götte M, Schöler HR, Reinbold R, Zucchi I, Milanesi L.
Overlapping Genes May Control Reprogramming of Mouse Somatic Cells into Induced Pluripotent Stem Cells (iPSCs) and Breast Cancer Stem Cells.
(2010) in In silico biology (Gedrukt)
Cazzaniga, Paolo; Mauri, Giancarlo; Milanesi, Luciano; Mosca, Ettore; Pescini, Dario
A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems
(2010) in Lecture notes in computer science
Calabria A., Mosca E., Viti F., Merelli I., Milanesi L.
SNPRanker: a tool for identification and scoring of SNPs associated to target genes.
(2010) in Journal of integrative bioinformatics
Alfieri R., Mosca E., Milanesi L.
Sys-Bio Gateway: a framework of bioinformatics database resources oriented to systems biology.
(2010) The International Forum on Pathway analysis in Proteomics, Oeiras, Portogallo, 21-22-ottobre 2010
Orro A., Gnocchi M., Calabria A., Di Pasquale D., Milanesi L.
Genetic Linkage Analysis on the Desktop Grid Infrastructure.
(2010) Third AlmereGrid Desktop Experience Workshop
D'Agostino D., Clematis A., Merelli I., Cozzi P., Milanesi L.
A Parallel Algorithm for Molecular Surface Matching Through Image Representation.
(2010) Parallel, Distributed and Network-Based Processing
Lazzati Z., D'Ursi P., Orro A., Bolzacchini E., Milanesi L.
Nuclear receptors database for predictive toxicity of EDC.
(2010) 14th International Biotechnology Symposium and Exhibition
Cozzi P., Viti F., Merelli I., Milanesi L.
Exploitation of a 3D-oriented ontology for choosing the representative proteins ion protein surfaces comparison.
(2010) FOCUS K3D Conference on Semantic 3D Media and Content
DUrsi P., Lazzati Z., Bolzacchini E., Milanesi L.
Reverse Molecular Docking for the identification of protein targets and pathways of endocrine disruptor Bisphenol A.
(2010) International Council of Chemical Associations Long-Range Research Initiative (ICCA-LRI) & JRC workshop, Integrating New Advances in Exposure Science and Toxicity Testing: Next Steps.
P. Cozzi, I. Merelli, D. D'Agostino, and L. Milanesi
A parallel implementation of genetic algorithms for parameters estimation of molecular surfaces similarity analysis.
(2010) BITS 2010
Corrada D., Battaglia C., Milanesi L.
Genome-wide MicroRNA target gene identification and functional characterization.
(2010) BITS2010
Moscatelli M., Bolzacchini E., D'Ursi P., Ferrero L., Gnocchi M., Lazzati Z., Orro A., Perrone M.G., Milanesi L.
Bioinformatics infrastructure for the analysis of the relationships between particulate matter and human health.
(2010) BITS2010
Lazzati Z., DUrsi P., Orro A., Moscatelli M., Santoro S., Bolzacchini E., Milanesi L.
Realizzazione di una banca dati strutturale dei recettori nucleari umani per la predizione della tossicità dei distruttori endocrini.
(2010) 83° Convegno Nazionale della Società Italiana di Biologia Sperimentale (SIBS)
Viti F., Merelli I., Di Silvestre D., Brunetti P., Milanesi L., Mauri P.
Repository for the management of tandem MS data
(2010) Nettab2010
Gnocchi M., Orro A., Di Pasquale D., Milanesi L.
A web portal for management of biological data and applications.
(2010) International Worshop on Science Gateways (IWSG2010)
Bolzacchini E., Ferrero L., Perrone M.G., Lazzati Z., DUrsi P., Orro A., Gnocchi M., Moscatelli M., Milanesi L.
Piattaforma bioinformatica per lo studio della relazione tra particolato atmosferico e salute umana.
(2010) Quarto Convegno Nazionale sul Particolato Atmosferico
Lazzati Z., D'Ursi P., Orro A., Bolzacchini E., Ferrero L., Sangiorgi G., Perrone M.G., Gnocchi M., Milanesi L.
Analisi in Silico dei Meccanismi dAzione (MOA) correlati allesposizione da Particolato Atmosferico: esame critico del caso del Bisfenolo A.
(2010) Quarto Convegno Nazionale sul Particolato Atmosferico
Cazzaniga, Paolo; Mauri, Giancarlo; Milanesi, Luciano; Mosca, Ettore; Pescini, Dario
A novel variant of P systems for the modelling and simulation of biochemical systems
(2010) 10th International Workshop on Membrane Computing, WMC 2009, 24-27/08/2009
Galizia, Antonella; Clematis, Andrea; Viti, Federica; Milanesi, Luciano
A dynamic parallel approach to recognize tubular breast cancer for TMA image building
(2010) PDP 2010, Pisa, 17-19, 2010
Barbera, Roberto; Donvit, Giacinto; Falzone, Alberto; Rocca, Giuseppe La; Maggi, Giorgio Pietro; Milanesi, Luciano; Vicarioicario, Saverio
INFN, IT the GENIUS grid portal and the robot certificates to perform phylogenetic analysis on large scale: A success story from the International LIBI project
(2010) in , 2010
Milanesi, Luciano
Bio-computer science and high performance calculations | Bioinformatica e calcolo ad alte prestazioni
(2010) in , 2010
A novel variant of tissue P Systems for the modelling of biochemical systems
(2010)
Modelling Spatial Heterogeneity and Macromolecular Crowding with Membrane Systems
(2010)
Martino V, Piscitelli E, Tria V, Cocola C, Mosca E, Carrada D, Vilardo L, Bertoli G, Brindisi A, Colombo D, Pelucchi P, Milanesi L, Reinbold R.A. and Zucchi I.
The role of microRNA in epithelial to mesenchymal transition.
(2010) International Summer School From pluripotency to senescence: molecular mechanisms of development, disease and ageing, Spetses Island
Gnocchi M., Ronzoni D. and Milanesi L.
Biobanking semantic Multilanguage concepts management web system.
(2010)
Ettore Mosca, Roberta Alfieri, Ivan Merelli, Federica Viti, Andrea Calabria, Luciano Milanesi
The Genes-to-Systems Breast Cancer (G2SBC) Database
(2010)
Ettore Mosca 1 , Gloria Bertoli, Eleonora Piscitelli, Laura Vilardo, Rolland A Reinbold, Ileana Zucchi, Luciano Milanesi
Identification of functionally related genes using data mining and data integration: a breast cancer case study
(2009) in BMC bioinformatics
Barbara Lazzari 1; Andrea Caprera 1; Alessandro Cestaro 2; Ivan Merelli 3;
Marcello Del Corvo 1; Paolo Fontana 2; Luciano Milanesi 3; Riccardo Velasco 2; Alessandra Stella 1,4
Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs
Barbara Lazzari 1; Andrea Caprera 1; Alessandro Cestaro 2; Ivan Merelli 3;
(2009) in BMC plant biology (Online)
D'Ursi P; Chiappori F; Merelli I; Cozzi P; Rovida E; Milanesi L
Virtual screening pipeline and ligand modelling for H5N1 neuraminidase
(2009) in Biochemical and biophysical research communications (Print)
Cozzi, Paolo; Merelli, Ivan; Milanesi, Luciano
A Visualization ToolKit Based Application for Representing Macromolecular Surfaces
(2009) in Lecture notes in computer science
Chiappori F; D'Ursi P; Merelli I; Milanesi L; Rovida E
In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study
(2009) in BMC bioinformatics
Mosca, E.; Merelli, I.; Alfieri, R.; Milanesi, L.
A distributed approach for parameter estimation in Systems Biology models
(2009) in Il Nuovo cimento della Società italiana di fisica. C. Geophysics and space physics (Testo stamp.)
Merelli, Ivan; Caprera, Andrea; Stella, Alessandra; Del Corvo, Marcello; Milanesi, Luciano; Lazzari, Barbara
The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections
(2009) in BMC bioinformatics
Alfieri, Roberta; Barberis, Matteo; Chiaradonna, Ferdinando; Gaglio, Daniela; Milanesi, Luciano; Vanoni, Marco; Klipp, Edda; Alberghina, Lilia
Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation
(2009) in BMC bioinformatics
Milanesi L., Calabria A., Di Pasquale D., Orro A., Trombetti G.
A HPC and Grid Enabling Framework for Genetic Linkage Analysis of SNPs
(2009) in Il Nuovo cimento (Online)
Mosca E., Bertoli G., Piscitelli E., Vilardo L., Reinbold R. A., Zucchi I., and Milanesi L.
Identification of functionally related genes using data mining and data integration: a breast cancer case study
(2009) in BMC bioinformatics
Milanesi, L; Calabria, A; Di Pasquale, D; Gnocchi, M; Orro, A; Trombetti, G
A HPC and Grid enabling framework for genetic linkage analysis of SNPs
(2009) in Il Nuovo cimento C (2009, Testo stamp.)
Castellani, G.; Verondini, E.; Giampieri, E.; Milanesi, L.; Bersani, F.; Zironi, I.; Remondini, D.
Large-scale modelling of neuronal systems
(2009) in Il Nuovo cimento della Società italiana di fisica. C. Geophysics and space physics (Testo stamp.)
Milanesi, Luciano; Romano, Paolo; Castellani, Gastone; Remondini, Daniel; Lio, Petro
Trends in modeling Biomedical Complex Systems.
(2009) in BMC bioinformatics
Calabria A., Di Pasquale D., Orro A., Trombetti G., Gnocchi M., Milanesi L.
Genetic linkage analysis challenge on a distributed Grid environment
(2009) in VOGiS Herald
D'Agostino, Daniele; Clematis, Andrea; Merelli, Ivan; Cozzi, Paolo; Milanesi, Luciano
Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening
(2009) 17th Euromicro Conference on Parallel, Distributed and network-based Processing (PDP 2009)
Corrada D., Battaglia C., Catalucci D., Guffanti A., Milanesi L.
Genome-wide microRNA target gene identification and annotation using multiple prediction algorithms
(2009) Nettab 2009
Maj C., Alfieri R., Mosca E., Milanesi L.
Towards an integrative model for the calcium role in the neurodegenerative diseases
(2009) Sysbiohealth Simposium
Lupoli S., Cozzi P., Alkelai A., Orro A., Torri F., Salvi E., Cosentino C., Tieran V., Milanesi L., B. Lerer B., Macciardi F.
Whole Genome Scan on schizophrenia in 2 Arab Israeli Samples
(2009) XVII World Congress of Psychiatric Genetics
Alfieri R., Bartocci E., Merelli E., Milanesi L.
Modelling Cell Cycle Regulation Using Hybrid Automata
(2009) Sysbiohealth Simposium
Calabria A., Di Pasquale D., Orro A., Trombetti G., Gnocchi M., Milanesi L.
Grid Based Application For SNPs Genome Wide Studies
(2009) CIBB 2009, Sixth International Meeting On Computational Intelligence Methods for Bioinformatics And Biostatistics
Barcella M., Mosca E., Alfieri R., Milanesi L.
A mathematical model of the glycolysis in cancer conditions
(2009) Sysbiohealth Simposium
Mosca E., Alfieri R., Viti F., Merelli I., Milanesi L.
Nervous System Database (NSD): data integration spanning molecular and system levels
(2009) 2nd INCF Congress of Neuroinformatics
Gnocchi M., Milanesi L.
Genomics and biomedical data management system
(2009) BITS 2009
Mosca, Ettore; Merelh, Ivan; Milanesi, Luciano; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo
Stochastic simulations on a grid framework for parameter sweep applications in biological models
(2009) High Performance Computational Systems Biology, 2009. HIBI '09., Trento, 14-16 Oct. 2009
Barbera, Roberto; Donvito, Giacinto; Falzone, Alberto; La Rocca, Giuseppe; Maggi, Giorgio Pietro; Vicario, S.; Milanesi, Luciano
On the performance of large scale bayesian phylogenetic analyses with grid portals and robot certificates
(2009) IWPLS'09 International Workshop on Portals for Life Sciences, e-Science Institute, 15 South College Street, Edinburgh, 14 - 15 September 2009
Lazzati Z., DUrsi P., Rovida E., Gambaro A., Zangrando R., Chiappori F., Milanesi L., Bolzacchini E.
A Docking Procedure for the identification of potential Bisphenol A protein targhets and characterization of the major environmental matrix involved in their pathways
(2009) XXIII Congresso Nazionale della Società Chimica Italiana
D'Ursi P., Lazzati Z., Bolzacchini E., Milanesi L.
Reverse molecular docking and pathway analysis for the identification of protein targets and pathways of endocrine disruptor Bisphenol A
(2009) Sysbiohealth Simposium
Viti, Federica; Mosca, Ettore; Merelli, Ivan; Calabria, Andrea; Alfieri, Roberta; Milanesi, Luciano
Ontological enrichment of the genes-to-systems breast cancer database
(2009) Third International Conference on Metadata and Semantic Research, MTSR 2009, 1-2/10/2009
Milanesi, Luciano; Alfieri, Roberta; Mosca, Ettore; Viti, Federica; D'Ursi, Pasqualina; Merelli, Ivan
Sys-bio gateway: A framework of bioinformatics database resources oriented to systems biology
(2009) in International Workshop on Portals for Life Sciences, 2009
Viti F., Mosca E., Merelli I., Calabria A., Alfieri R., Milanesi L.
Metadata and Semantic Research, Ch. Ontological Enrichment of the Genes-to-Systems Breast Cancer Database
(2009) in , 2009
Viti, Federica; Mosca, Ettore; Merelli, Ivan; Calabria, Andrea; Alfieri, Roberta; Milanesi, Luciano
Ontological Enrichment of the Genes-to-Systems Breast Cancer Database
(2009) in , 2009
Mitra, Chanchal K; Milanesi, Luciano
An unusal distribution of 6-nt sequences near the transcription start site.
(2008) in Journal of integrative bioinformatics
Viti, Federica; Merelli, Ivan; Caprera, Andrea; Lazzari, Barbara; Stella, Alessandra; Milanesi, Luciano
Ontology-based, Tissue MicroArray oriented, image centered tissue bank
(2008) in BMC bioinformatics
F. Ledda, L. Milanesi, and E. Vargiu.
GAME: A Generic Architecture based on Multiple Experts for Predicting Protein Structures
(2008)
Mitra Chanchal K and Luciano Milanesi.
An Unusual Distribution of 6-nt Sequences Near The Transcription Start Site.
(2008)
Panzitta Francesca, Andrea Caprera, Ivan Merelli, Luciano Milanesi, John L. Williams, Barbara Lazzari, and Alessandra Stella.
Mining the Bovine Genome with the Bovine SNP Retriever
(2008) in Journal of heredity
Viti Federica, Ivan Merelli, Andrea Caprera, Barbara Lazzari, Alessandra Stella, Luciano Milanesi
Ontology-based, Tissue MicroArray oriented, image centred tissue bank
(2008) in BMC bioinformatics
Francesconi, Mirko; Remondini, Daniel; Neretti, Nicola; Sedivy, John M.; Cooper, Leon N.; Verondini, Ettore; Milanesi, Luciano; Castellani, Gastone
Reconstructing networks of pathways via significance analysis of their intersections
(2008) in BMC bioinformatics
Alfieri Roberta; Ivan Merelli; Ettore Mosca; Luciano Milanesi
The Cell Cycle DB: a systems biology approach to cell cycle analysis
(2008) in Nucleic acids research
Lazzari, Barbara; Caprera, Andrea; Vecchietti, Alberto; Merelli, Ivan; Barale, Francesca; Milanesi, Luciano; Stella, Alessandra; Pozzi, Carlo
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
(2008) in BMC bioinformatics
Orro A.; Guffanti G.; Salvi E.; Macciardi F.;Milanesi L.
SNPLims: A Data Management System for Genome Wide Association Studies
(2008) in BMC bioinformatics
Merelli I.; Orro A.; D'Agostino D.; Clematis A.; Milanesi L.
A Parallel Protein Surface Reconstruction System
(2008) in International journal of bioinformatics research and applications (Print)
Panzitta, Francesca; Caprera, Andrea; Merelli, Ivan; Milanesi, Luciano; Williams, John L.; Lazzari, Barbara; Stella, Alessandra
Mining the Bovine Genome with the "Bovine SNP Retriever"
(2008) in Journal of heredity
Ledda F. , L. Milanesi, and E. Vargiu.
A Generic Architecture based on Multiple Experts for Predicting Protein Structures.
(2008) BSBAL'08 - 2008 SIWN International Conference on Bioinformatics, Systems Biology and Artificial Life, 22-24 July 2008., Glasgow, UK,
Riegman F. P., Milanesi L., Scaglione S., Beltrame F.
Tissue-Specific approach for automatic pathological areas identification in tissue micorarray images.
(2008) GNB 2008, Patron Ed. ISNB 978-88-555-2983-9., 3-5 July 2008, Pisa, Italy, Pisa, Italy
Lescai Francesco, Daniel Remondini, Mirko Francesconi, Luciano Milanesi, Claudio Franceschi, Gastone Castellani.
Multiscale approach to Genome-Wide Association studies: network structure, linkage disequilibrium blocks, genes and pathways
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Varenna, Italy, Varenna, Italy
Mitra Chanchal K and Luciano Milanesi.
An Unusual Distribution of 6-nt Sequences Near The Transcription Start Site.
(2008) International Symposium on Integrative Bioinformatics 5th annual meeting 20th to 22nd August 2008 Leucorea, Lutherstadt Wittenberg, Germany., Lutherstadt Wittenberg, German
Alfieri Roberta, Luciano Milanesi, Emanuela Merelli, Luca Tesei, Nicola Cannata.
Using SKOS to formalize parameter estimation in systems biology
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Villa Monastero, Varenna, Italy, Varenna, Italy
Mosca Ettore, Roberta Alfieri, Luciano Milanesi.
The BreastCancerDB: a data integration approach for breast cancer research oriented to systems biology .
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Varenna, Italy, Varenna, Italy
Chiappori Federica, Pasqualina DUrsi, Ivan Merelli, Marco Salina, Ermanna Rovida, Luciano Milanesi.
A pipeline for saturation mutagenesis and docking, applied to the endothelial protein C receptor .
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Villa Monastero, Varenna, Italy, Varenna, Italy
Di Pasquale Davide, Andrea Calabria, Gabriele Trombetti, Alessandro Orro,
High Performance Computing Infrastructures for Genetic Linkage Analysis
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Villa Monastero, Varenna, Italy, Villa Monastero, Varenna, Ital
Merelli Ivan, Andrea Caprera, Alessandra Stella, Luciano Milanesi, Barbara Lazzari.
The Human EST Ontology Explorer: a tissue-oriented visualisation system for ontologies distribution in human EST collections.
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Vlla Monastero, Varenna, Italy, Varenna, Italy
Salvi Erika, Alessandro Orro, Guia Guffanti, Fabio Macciardi, Luciano Milanesi.
Ancestry correction in genome-wide association studies using stratification methodologies
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Varenna, Italy, Varenna, Italy
Barberis Matteo, Roberta Alfieri, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina.
A systems biology analysis of the entry of resting mammalian cells into S phase.
(2008) Systems Biology of Mammalian Cells, which will take place in Dresden (Germany) in May 22-24 2008, Dresden (Germany)
Orro Alessandro , Luciano Milanesi.
Data management for SNP genotyping technologies
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Varenna, Italy, Varenna, Italy
Salvi E., G. Guffanti, A. Orro, F. Torri, S. Lupoli, J. Turner, D. Keator, J. Fallon, S. Potkin, C. Barlassina, D. Cusi, L. Milanesi, F. Macciardi..
Comparison of different methods to estimate genetic ancestry and control for stratification in genome-wide association studies.
(2008) ASHG Philadelphia, PA, USA 11-15 November 2008., Philadelphia, PA, USA
Salvi E., Guffanti G., Orro A., Lupoli S., Torri F., Potkin S., Barlassina C., Cusi D., Milanesi L., Macciardi F.
Comparison of diffenet methods to control for stratification in genome-wide association studies.
(2008) ASHG Philadelphia PA, USA 11-15 November 2008, Philadelphia, PA, USA
Di Pasquale A., D. , A. Orro, G. Trombetti, E. Salvi and L. Milanesi.
Genome wide linkage analysis using SNPs in high performance distributed environments.
(2008) ASHG Philadelphia PA, USA 11-15 November 2008, Philadelphia, PA, USA
Lupoli S., Torri F., Citterio L.,Barlassina C., Orro A., Martinelli Boneschi F., Milanesi L., Cusi D., Bianchi G., Macciardi F.
Development of a new predictive algorithm for drug response.
(2008) . ASHG Philadelphia PA, USA 11-15 November 2008, Philadelphia, PA, USA
Barlassina C., Cosentino C., Citterio L., Lanzani C., Zagato L., Casamassima N., Simonini M., Salvi E., Torri F., Lupoli S., Manunta P., Bianchi G., Milanesi L., Macciardi F., Cusi D.
Whole genome scan salt-sensitivity and response to diuretic treatment in essential hypertension.
(2008) SHG Philadelphia PA, USA 11-15 November 2008, Philadelphia, PA, USA
Barberis, Matteo; Alfieri, Roberta; Chiaradonna, Ferdinando; Gaglio, Daniela; Milanesi, Luciano; Vanoni, Marco; Klipp, Edda; Alberghina, Lilia.
systems biology analysis of the entry of resting mammalian cells into S phase.
(2008) The 9th International Conference on System Biology - ICSB2008, August 22-28, 2008 Gothenburg, Sweden, Gothenburg, Sweden
Milanesi L, Mosca E and Alfieri R
The BrainGeneExpress Database: a data integration approach for neuroinformatic research oriented to systems biology.
(2008) Frontiers in Neuroinformatics. Conference Neuroinformatics 2008. Stockholm,Sweden September 7 - 9, 2008., Stockholm,Sweden
Alfieri Roberta, Ezio Bartocci, Emanuela Merelli, Luciano Milanesi.
Hybrid Automata for Modelling Cellular Proliferation and Apotosis.
(2008) SysBioHealth 2008 , 24th to 25th November, Bologna Italy, Bologna Italy
Calabria A, D. Di Pasquale, A. Orro, G. Trombetti, L. Milanesi.
Genetic Linkage analysis challenges on a distributed Grid environment.
(2008) The Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2008), Novosibirsk, Russia
Alfieri R.;Mosca E.;Milanesi L.
Gene Nerve Cell DB: a data integration approach for neuroinformatics research oriented to systems biology.
(2008) SysBioHealth 2008 , 24th to 25th November, Bologna Italy, Bologna Italy
Chiappori Federica, Ivan Merelli, Luciano Milanesi, Ermanna Rovida.
Comparison of protein-protein algorithms for the study of Proteinase-3 Endothelial Protein C Receptor complex.
(2008) SysBioHealth 2008 , 24th to 25th November, Bologna Italy, Bologna Italy
Corrada Dario, Pasqualina DUrsi, Sara Botti, Aldo Luperini, Luciano Milanesi,Ermanna Rovida
3D-Structure Prediction of the Modular Protein Sialoadhesin Using a Multi-step Modelling Strategy
(2008) SysBioHealth 2008 , 24th to 25th November, Bologna Italy, Bologna, Italy, 18-20/03/2009
Calabria Andrea, Davide Di Pasquale, Gabriele Trombetti, Paolo Cozzi, Alessandro Orro, Matteo Gnocchi, Luciano Milanesi.
Genome Wide Linkage Analysis and Systems Knowledge: an Integrated Web Framework for Distributed Execution and Results Annotation.
(2008) SysBioHealth 2008 , 24th to 25th November, Bologna Italy, Bologna Italy
Mosca Ettore, Roberta Alfieri, Luciano Milanesi.
Genes-to-Systems Breast Cancer (G2SBC) Database: a data integration approach for breast cancer research oriented to systems biology.
(2008) SysBioHealth 2008 , 24th to 25th November, Bologna Italy, Bologna, Italy
Cozzi Paolo, Ivan Merelli, and Luciano Milanesi.
A Visualization ToolKit Based Application for Representing Macromolecular Surfaces.
(2008) Computational Intelligence Methods For Bioinformatics And Biostatistic, Vietri sul Mare (Salerno), 3-4 October 2008 - Lecture Notes in Computer Science (LNCS), Ed. Springer 2008, Vietri sul Mare (Salerno), Ita
Chiappori F., P. DUrsi , I. Merelli, E. Rovida, L. Milanesi
Pipeline for saturation mutagenesis and docking screening in the study of protein-ligand interaction: the Endothelial Protein C Receptor (EPCR)
(2008) EMBO course "Docking Prediction in Protein-Protein interaction", Barcelona Supercomputing Centre, 2008., Barcelona, Spain
Mosca Ettore,, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri, Luciano Milanesi
A stochastic, discrete model for the simulation of the action potential.
(2008) SysBioHealth 2008 , 24th to 25th November, Bologna Italy, Bologna , Italy
Salvi Erika, Alessandro Orro, Guia Guffanti, Luciano Milanesi, Fabio Macciardi.
Stratification correction in genome-wide association studies. SysBioHealth 2008
(2008) SysBioHealth 2008 , 24th to 25th November, Bologna Italy, Bologna, Italy
Kolpakov F.A., V.V. Poroikov, R.N. Sharipov L. Milanesi, A.E. Kel.
CYCLONET: An integrated Database on Cell Cycle regulation and carcinogenesis.
(2008) The Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2008) Novosibirsk, Russia June 22-28, 2008, Novosibirsk, Russia
Mosca E., I. Merelli, R. Alfieri L. Milanesi.
A Grid oriented evolution strategy to approach the parameter estimation problem in System Biology models.
(2008) The Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2008) Novosibirsk, Russia June 22-28, 2008, Novosibirsk, Russia
Galizia Antonella, Viti Federica, Orro Alessandro, D'Agostino Daniele, Merelli Ivan, Luciano Milanesi, Andrea Clematis.
TMAinspect, an EGEE Framework for Tissue MicroArray image handling. Modern computer tools for the biosciences. MBIO08 - International Conference CCGrid 2008 22 may 2008, Lyon, France.
(2008) MBIO08 - International Conference CCGrid 2008 22 may 2008, Lyon, France., Lyon, France.
Milanesi Luciano, Chanchal K Mitra
GC-rich special short sequences dominate eukaryotic promoter regions.
(2008) HGM2008 HUGO's13th Human Genome Meeting Hyderabad, India Sat 27-Tue 30 Sep 2008, Hyderabad, India
van der Wath, Richard C.; van der Wath, Elizabeth; Carapelli, Antonio; Nardi, Francesco; Frati, Francesco; Milanesi, Luciano; Lio, Pietro
Bayesian phylogeny on grid
(2008) Lecture Notes in Computer Science, Springer Verlag , BIRD08 June 18-20, 2008, Pisa Italy, Pisa Italy
Galizia, Antonella; D'Agostino, Daniele; Clematis, Andrea; Viti, Federica; Orro, Alessandro; Merelli, Ivan; Milanesi, Luciano
Enabling parallel TMA image analysis in a grid environment
(2008) CISIS 2008 The Second International Conference on Complex, Intelligent and Software Intensive Systems, Barcelona, Spain, 4-7 March 2008
Galizia, Antonella; Viti, Federica; Orro, Alessandro; D'Agostino, Daniele; Merelli, Ivan; Milanesi, Luciano; Clematis, Andrea
TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling
(2008) CCGRID 2008, Lyon, France, 19-22 May 2008
Merelli I.; Cozzi P.; D'Agostino D.; Clematis A.; Milanesi L.
Image based system for surface matching in macromolecular screening
(2008) 2008 IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2008), Philadelphia, PA, USA, Nov. 7-9, 2008., Philadelphia, USA, 3-5 November 2008
D'Agostino D.; Merelli I.; Clematis A.; Milanesi L.; Orro A.
A Parallel Workflow for the Reconstruction of Molecular Surfaces
(2008) International Parallel Computing Conference 2007, RWTH Aachen Univ, Aachen,Germany, SEP 04-07, 2007
Galizia A.; Viti F.; D'agostino D.; Merelli I.; Milanesi L.; Clematis A.
Experimenting Grid Protocols to improve privacy preservation in efficient distributed image processing
(2008) International Parallel Computing Conference 2007, RWTH Aachen Univ, Aachen,Germany, SEP 04-07, 2007
Alfieri, Roberta; Milanesi, Luciano
Multi-level data integration and data mining in systems biology
(2008) in , 2008
Milanesi Luciano
CNR Bioinformatics
(2008) Pacini, Pisa (Italia) in , 2008
D'Agostino D., Merelli I., Clematis A., Orro A., Milanesi L.
Parallel Workflow for the Reconstruction of Molecular Surfaces
(2008) in , 2008
Trombetti GA, Merelli I, Orro A, Milanesi L.
BGBlast: a BLAST grid implementation with database self-updating and adaptive
(2007)
Milanesi, Luciano; Armano, Giuliano; Breton, Vincent; Romano, Paolo
Guest editorial: Special section on grid, web services, software agents, and ontology applications for life sciences
(2007) in IEEE transactions on nanobioscience
Viti F., Merelli I., Galizia A., D'Agostino D., Clematis A., Milanesi L.
Tissue MicroArray: a distributed Grid approach for image analysis.
(2007) in Studies in health technology and informatics (Online)
Van der Wath, Elizabeth; Moutsianas, Loukas; van der Wath, Richard; Visagie, Alet; Milanesi, Luciano; Lio, Pietro
Grid methodology for identifying co-regulated genes and transcription factor binding sites
(2007) in IEEE transactions on nanobioscience
Milanesi L., G. Armano, V. Breton, and P. Romano
Special section on Grid, Web Services, Software Agents and Ontology applications for life sciences.
(2007) in IEEE transactions on nanobioscience
Lazzari, Barbara; Caprera, Andrea; Cosentino, Cristian; Stella, Alessandra; Milanesi, Luciano; Viotti, Angelo
ESTuber db: an online database for Tuber borchii EST sequences
(2007) in BMC bioinformatics
Kolpakov, Fedor; Poroikov, Vladimir; Sharipov, Ruslan; Kondrakhin, Yury; Zakharov, Alexey; Lagunin, Alexey; Milanesi, Luciano; Kel, Alexander
CYCLONET - an integrated database on cell cycle regulation and carcinogenesis
(2007) in Nucleic acids research
Emanuela Merelli,Giuliano Armano, Nicola Cannata, Flavio Corradini, Mark d'Inverno, Andreas Doms, Phillip Lord, Andrew Martin, Luciano Milanesi, Steffen Mo« ller, Michael Schroeder, Michael Luck
Agents in bioinformatics, computational and systems biology.
(2007) in Briefings in bioinformatics
Trombetti GA, Bonnal RJ, Rizzi E, De Bellis G, Milanesi L.
Data handling strategies for high throughput pyrosequencers.
(2007) in BMC bioinformatics
D'Ursi P, Marino F, Caprera A, Milanesi L, Faioni EM, Rovida E.
ProCMD: a database and 3D web resource for protein C mutants.
(2007) in BMC bioinformatics
Boccia, Angelo; Busiello, Gianluca; Milanesi, Luciano; Paolella, Giovanni
A fast job scheduling system for a wide range of bioinformatic applications
(2007) in IEEE transactions on nanobioscience
Jacq, Nicolas; Breton, Vincent; Chen, Hsin-Yen; Ho, Li-Yung; Hofmann, Martin; Kasam, Vinod; Lee, Hurng-Chun; Legre, Yannick; Lin, Simon C.; Maass, Astrid; Medernach, Emmanuel; Merelli, Ivan; Milanesi, Luciano; Rastelli, Giulio; Reichstadt, Matthieu; Salzemann, Jean; Schwichtenberg, Horst; Wu, Ying-Ta; Zimmermann, Marc
Virtual screening on large scale grids
(2007) in Parallel computing
Merelli, Ivan; Morra, Giulia; Milanesi, Luciano
Evaluation of a grid based molecular dynamics approach for polypeptide simulations
(2007) in IEEE transactions on nanobioscience
Remondini, Daniel; Neretti, Nicola; Franceschi, Claudio E.; Tieri, Paolo; Sedivy, John M.; Milanesi, Luciano; Castellani, Gastone C.
Networks from gene expression time series: Characterization of correlation patterns
(2007) in International journal of bifurcation and chaos in applied sciences and engineering
Rebholz-Schuhman, Dietrich; Cameron, Graham; Clark, Dominic; van Mulligen, Erik; Coatrieux, Jean-Louis; Del Hoyo Barbolla, Eva; Martin-Sanchez, Fernando; Milanesi, Luciano; Porro, Ivan; Beltrame, Francesco; Tollis, Ioannis; Van der Lei, Johan
SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics
(2007) in BMC bioinformatics
Remondini D., Neretti N., Franceschi C., Tieri P., J. Sedivy M., Milanesi L., Castellani G..
from gene expression time series: characterization of correlation patterns. International
(2007)
Bansard J. Y., D. Rebholz-Schuhmann, G. Cameron, D. Clark, E. van Mulligen, F. Beltrame, E. Del Hoyo Barbolla, F. Martin-Sanchez, L. Milanesi, I. Tollis, J. van der Lei, and J. L Coatrieux.
Medical Informatics and Bioinformatics
(2007) in IEEE transactions on information technology in biomedicine
Bansard, J. Y.; Rebholz-Schuhmann, D.; Cameron, G.; Clark, D.; van Mulligen, E.; Beltrame, F.; Del Hoyo Barbolla, E.; Martin-Sanchez, F.; Milanesi, L.; Tollis, I.; van der Lei, J.; Coatrieux, J. L.
Medical informatics and bioinformatics: A bibliometric study
(2007) in IEEE transactions on information technology in biomedicine
Trombetti GA, Merelli I, Orro A, Milanesi L.
BGBlast: a BLAST grid implementation with database self-updating and adaptive
(2007) in BMC bioinformatics
Bartocci, Ezio; Cacciagrano, Diletta; Cannata, Nicola; Corradini, Flavio; Merelli, Emanuela; Milanesi, Luciano; Romano, Paolo
An agent-based multilayer architecture for bioinformatics grids
(2007) in IEEE transactions on nanobioscience
Romano, Paolo; Bartocci, Ezio; Bertolini, Guglielmo; De Paoli, Flavio; Marra, Domenico; Mauri, Giancarlo; Merelli, Emanuela; Milanesi, Luciano
Biowep: a workflow enactment portal for bioinformatics applications
(2007) in BMC bioinformatics
Alfieri Roberta; Merelli Ivan; Mosca Ettore; Milanesi Luciano.
A Data Integration Approach for Cell Cycle Analysis oriented to Model Simulation in Systems Biology
(2007) in BMC systems biology
Alfieri R, Mosca E, Merelli I, Milanesi L.
Parameter estimation for cell cycle ordinary differential equation (ODE) models
(2007)
Orro, Alessandro; Milanesi, Luciano
An Agent Approach for Protein Function Analysis in a Grid Infrastructure
(2007) in Studies in health technology and informatics (Print)
Viti, Federica; Merelli, Ivan; Galizia, Antonella; D'Agostino, Daniele; Clematis, Andrea; Milanesi, Luciano
Tissue MicroArray: a Distributed Grid Approach for Image Analysis
(2007) HealthGrid2007, Ginevra
Alfieri, Roberta; Mosca, Ettore; Merelli, Ivan; Milanesi, Luciano
Parameter estimation for cell cycle ordinary differential equation (ODE) models using a grid approach
(2007) HealthGrid 2007, 24-27/04/2007
D'Agostino, Daniele; Clematis, Andrea; Merelli, Ivan; Milanesi, Luciano; Coloberti, Matteo
A Grid Service based parallel molecular surface reconstruction system
(2007) 16th Euromicro International Conference on Parallel, Distributed and network-based Processing (PDP 2008)
Luciano MILANESI, Ettore MOSCA, Alessandro ORRO, Ivan MERELLI
ICT and GRID computing for Bioinformatics and Systems Biology
(2007) 1st SysBioHealth, Milano
Ettore MOSCA, Roberta ALFIERI, Ivan MERELLI, Luciano MILANESI
Parameters estimation for cell cycle ODE models using high performance computing
(2007) 1st SysBioHealth, Milano
Daniele DAgostino, Ivan Merelli, Andrea Clematis, Luciano Milanesi, Alessandro Orro
A Parallel Workflow for the Reconstruction of Molecular Surfaces
(2007) PraCo2007, Aachen
Federica Viti, Ivan Merelli, Andrea Caprera, Barbara Lazzari, Luciano Milanesi
Ontology-based image description oriented to Tissue MicroArray experiments design
(2007) Nettab 2007, Pisa
Antonella Galizia, Federica Viti, Daniele DAgostino,Ivan Merelli, Luciano Milanesi, Andrea Clematis
Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing
(2007) ParCo2007, Aachen
Luciano Milanesi
BIOINFOGRID: Bioinformatics Simulation and Modeling based on GRID
(2007) EMFCSC, Erice
Lazzari B., Caprera A., Vecchietti A., Merelli I., Barale F., Milanesi L., Stella A., Pozzi C
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
(2007) BITS2007, Napoli
Orro A, Guffanti G., Salvi E.,Macciardi F., Milanesi L
Data Management and Genome Wide Association Screening
(2007) BITS2007, Napoli
Mosca E., Merelli I., Milanesi L., Alfieri R
Development of a systems biology infrastructure for mathematical modelling and parameter estimation
(2007) BITS2007, Napoli
DUrsi P. Chiappori F., Salvi E., Merelli I., Rovida E., Milanesi L
Grid docking simulation for comparative ligand binding of Neurominidase structures
(2007) BITS2007, Napoli
Andrea Calabria, Alessandro Orro, Luciano Milanesi
An Information System for Data and Analysis Tracking in Medical Genetic Studies
(2007) Nettab2007, Pisa
Milanesi L., Breton V., Lio P
Bioinformatics Challenges in Life Science
(2007) IST-AFRICA, Maputo (Mozambico)
Mirko Francesconi, Daniel Remondini, Nicola Neretti, John Sedivy, Ettore Verondini, Luciano Milanesi, Leon Cooper, Gastone Castellani
Reconstructing networks of pathways via significance analysis of their intersections
(2007) Nettab2007, Pisa
Orro A, Milanesi L
An agent approach for protein function analysis in a grid infrastructure
(2007) HealthGrid2007, Ginevra
Alfieri, Roberta; Mosca, Ettore; Merelli, Ivan; Milanesi, Luciano
Parameter Estimation for Cell Cycle Ordinary Differential Equation (ODE) Models using a Grid Approach
(2007) HealthGrid2007, Ginevra
Roberta Alfieri, Matteo Barberis, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina
Towards a nucleo/cytoplasmic model of the G1 to S transition in mammalian cells
(2007) FEBS-SysBio2007, Gosau (Austria)
Milanesi L., Merelli I
High Performance GRID Based Implementation for Genomics and Protein Analysis
(2007) HealthGrid2007, Ginevra
Trombetti, Gabriele A.; Merelli, Ivan; Orro, Alessandro; Milanesi, Luciano
BGBlast: A BLAST Grid Implementation with Database Self-Updating and Adaptive Replication
(2007) HealthGrid2007, Ginevra
Jacq, Nicolas; Breton, Vincent; Chen, Hsin-Yen; Ho, Li-Yung; Hoftmann, Martin; Lee, Hurng-Chun; Legre, Yannick; Lin, Simon C.; Maass, Astrid; Medernach, Emmanuel; Merelli, Ivan; Milanesi, Luciano; Rastelli, Giulio; Reichstadt, Matthieu; Salzemann, Jean; Schwichtenberg, Horst; Sridhar, Mahendrakar; Kasam, Vinod; Wu, Ying-Ta; Zimmermann, Marc
Grid-enabled high throughput virtual screening
(2007) IOS Press, Amsterdam (Paesi Bassi) in Studies in Health Technology and Informatics, 2007
Jacq, Nicolas; Breton, Vincent; Chen, Hsin Yen; Ho, Li Yung; Hofmann, Martin; Lee, Hurng Chun; Legré, Yannick; Lin, Simon C.; Maaß, Astrid; Medernach, Emmanuel; Merelli, Ivan; Milanesi, Luciano; Rastelli, Giulio; Reichstadt, Matthieu; Salzemann, Jean; Schwichtenberg, Horst; Sridhar, Mahendrakar; Kasam, Vinod; Kasam, Vinod; Wu, Ying Ta; Zimmermann, Marc
Grid-enabled high throughput virtual screening
(2007) in , 2007
Clematis A., D'Agostino D., Galizia A., Merelli I., Milanesi L., Viti F.
Experimenting Grid Protocols to improve privacy preservation in efficient distributed image processing
(2007) Parallel Computing 2007 (ParCo 2007), Aachen
D'Agostino D., Merelli I., Clematis A., Orro A., Milanesi L.
A Parallel Workflow for the Reconstruction of Molecular Surfaces
(2007) Parallel Computing 2007 (ParCo 2007), Aachen
Romano P., G. Bertolini, F. De Paoli, M. Fattore, D. Marra, G. Mauri, E. Merelli, I. Porro, S. Scaglione, L. Milanesi,
Network integration of data and analysis of oncology interest,
(2006)
Milanesi, L.; Merelli, I.
High Performance GRID Based Implementation for Genomics and Protein Analysis
(2006) in Studies in health technology and informatics (Print)
Armano G., A. Orro, L. Milanesi , E. Vargiu
MASSP3: A System for Predicting Protein Secondary Structure
(2006) in EURASIP journal on applied signal processing
Lee, Hurng-Chun; Salzemann, Jean; Jacq, Nicolas; Chen, Hsin-Yen; Ho, Li-Yung; Merelli, Ivan; Milanesi, Luciano; Breton, Vincent; Lin, Simon C.; Wu, Ying-Ta
Grid-enabled high-throughput in silico screening against influenza a neuraminidase
(2006) in IEEE transactions on nanobioscience
G.A. Trombetti, I. Merelli, L. Milanesi.
High performance cDNA sequence analysis using grid technology.
(2006) in Journal of parallel and distributed computing (Print)
Severgnini M, Bicciato S, Mangano E, Scarlatti F, Mezzelani A, Mattioli M, Ghidoni R, Peano C, Bonnal R, Viti F, Milanesi L, De Bellis G, Battaglia C
Strategies for comparing gene expression profiles from different microarray platforms: Application to a case-control experiment
(2006) in Analytical biochemistry (Print)
Saltini, G; Dominici, R; Lovati, C; Cattaneo, M; Michelini, S; Malferrari, G; Caprera, A; Milanesi, L; Finazzi, D; Bertora, P; Scarpini, E; Galimberti, D; Venturelli, E; Musicco, M; Adorni, F; Mariani, C; Biunno, I
A novel polymorphism in SEL1L confers susceptibility to Alzheimer's disease
(2006) in Neuroscience letters (Print)
Roberta Alfieri, Matteo Barberis, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina.
Towards a nucleo/cytoplasmic model of the G1 to S transition in mammalian cells.
(2006) YSBN 1st Workshop, Vienna, Austria
Luciano Milanesi, Ferdinando Chiaradonna, Roberta Alfieri, Daniela Gaglio, Marco Vanoni, Lilia Alberghina.
Network identification for the G1 to S transition in mammalian cells.
(2006) (ICSB-2006) 7th International Conference on Systems Biology, Yokohama Japan
Milanesi L., Alfieri R., Merelli I.
A Data Mining Approach for Yeast and Mammalian Cell Cycle Models in Systems Biology.
(2006) International Conference on Bioinformatics - INCOB2006, New Delhi, India.
Fedor Kolpakov, Vladimir Poroikov, Ruslan Sharipov, Milanesi Luciano, Alexander Kel.
Cyclonet - an integrated database on cell cycle regulation and carcinogenesis.
(2006) (ICSB-2006) 7th International Conference on Systems Biology, Yokohama Japan
Trombetti G. A., Bonnal R. J. P., Rizzi E., De Bellis G., Milanesi L.
Data handling strategies for high throughput pyrosequencers.
(2006) BITS2006, Bologna
Poroikov V.V., Koborova O.N., Zakharov A.V., Lagunin A.A., Filimonov D.A., Gloriozova T.A., Sharipov R., Kolpakov F., Milanesi L., Kel A.
Targeting Cell Cycle: Old And New Stories In Anticancer Therapy
(2006) EAMHC- 4th Eurasian Meeting on Heterocyclic Chemistry, Thessaloniki, Greece
Milanesi L., Alfieri R., Merelli I
HCCdb: Data Mining System for Human Cell Cycle Gene
(2006) The Fifth International Conference in Bioinformatics of Genome Regulation and Structure (BGRS2006), Novosibisk Russia
Alfieri R., Milanesi L.
Development of a data mining system for Human Cell Cycle analysis.
(2006) SIBBM The Cell cycle, Rome, Italy
Caprera A., Cosentino C., Viotti A., Stella A., Milanesi L. and Lazzari B.
ESTuber db: a tool for Tuber borchii EST sequence management
(2006) BITS2006, Bologna
Remondini D., Neretti N. , Milanesi L. , Tatar M., Sedivy J. M., Franceschi C. , Castellani G. C.
Correlation analysis of gene expression time series at multiple scales: from the entire genome to metabolic and signalling pathways
(2006) BITS2006, Bologna
Milanesi L. Alfieri R. Merelli I.
Developement of a data mining system for human cell cycle data analysis
(2006) BITS2006, Bologna
Orro A., Armano G., Vargiu E., Milanesi L.
FunGenAgent: An Agent-Based Approach for Workflow Composition in Homology Functional Genomics.
(2006) BITS2006, Bologna
Cameron G, Clark D, Beltrame F., Coatrieux J. L., Del Hoyo Barbolla E., Martin-Sanchez F., Milanesi L., Tsiknakis M., Johan Van der Lei J
SYMBiomatics: synergies between bioinformatics and medical informatics
(2006) BITS2006, Bologna
Morra G., Milanesi L.
Molecular dynamics simulations of TBP complexed with diverse TATA variants.
(2006) BITS2006, Bologna
Romano P., Bartocci E., Bertolini G., De Paoli F., Marra D., Mauri G., Merelli E., Milanesi L.
BIOWEP: a workflow enactment portal for bioinformatics applications
(2006) BITS2006, Bologna
Milanesi L., Breton V., Suhai S., Liò P., Liuni S., Jacq N., Maggi G., Legre Y., Barbera B., Meloni G., Arlandini C., Sanger M., Merelli I., Andreas G., Bishop C., Beltrame F., Porro I., Orro A., Morra G., Trombetti G., Mazzuccato M.
BioinfoGRID: EU Bioinfomatics GRID Project
(2006) BITS2006, Bologna
Beltrame F., Corradi L., Milanesi L., Papadimitropoulos A., Porro I., Scaglione S., Schenone A., Torterolo L., Viti F.
A Grid based solution for Management and Analysis of Microarrays in distributed Bone Marrow Stem Cells experiments.
(2006) BITS2006, Bologna, Italy
Orro A., Milanesi L.
An Agent System for Automatic Workflows Composition in Homology-Based Functional Genomics.
(2006) MASBIOMED'06 - Multi-Agent Systems for Medicine, Computational Biology, and Bioinformatics., Hakodate, Japan.
MilanesiI L.,Mazzucato M., Breton V., Lio, P., Meloni, G., Suhai S., Gisel A., Maggi G., Legre Y., Liuni, S.
BIOINFOGRID: Bioinformatics Grid Application for life science
(2006) EGEE User Forum, Geneva
Bartocci E., Cannata N., Corradini F., Merelli E., Milanesi L., Romano P.
A multilayer architecture to support bioinformaticians of today and tomorrow.
(2006) BITS2006, bologna, Italy
Marino F., Morra G., DUrsi P., Salvi E., Milanesi L., Faioni E., Rovida E.
Molecular dynamics and docking of the G216D mutation in the catalytic domain of activated protein C.
(2006) BITS2006, Bologna, Italy
DUrsi P., Marino F., Caprera A., Milanesi L., Faioni E., Rovida E.
3D-protein C mutation database: integration of structural, functional and clinical data of natural protein C mutants
(2006) BITS2006, Bologna, Italy
Viti F., Merelli I., Porro I., Papadimitropoulos A., Milanesi L.
Valuation study of available genomic data storage platforms
(2006) BITS2006, Bologna, Italy
Merelli I., DAgostino D., Clematis A., Milanesi L.
Analysis system for Protein Surface Recognition.
(2006) BITS2006, Bologna, Italy
Nicolas Jacq, Vincent Breton, Hsin-Yen Chen, Li-Yung Ho, Martin Hofmann, Hurng-Chun Lee, Yannick Legré, Simon C. Lin, Astrid Maaß, Emmanuel Medernach, Ivan Merelli, Luciano Milanesi, Giulio Rastelli, Matthieu Reichstadt, Jean Salzemann, Horst Schwichtenbe
Distributed, High-Performance and Grid Computing in Computational Biology
(2006) GCCB2006, Eilat (Israele)
Levistsky, Pichueva, Kochetov A. V. Milanesi L
DNA Nucleosome organization of promoter gene regions.
(2006) in , 2006
Merelli I., Pattini L., Cerutti S., Milanesi L.
Amino acids patterns in protein domain functionality analysis.
(2006) in , 2006
Milanesi, L.; Merelli, I.
High performance GRID based implementation for genomics and protein analysis
(2006) in , 2006
Kochianov N., Hofestaedt R., Milanesi L
Bioinformatics of Genome Regulation and Structure II
(2006) , 2006
Pattini, L; Merelli, I; Cerutti, S; Milanesi, L
Representation and modeling of protein surface determinants
(2005) in IEEE transactions on nanobioscience
Armano, G; Milanesi, L; Orro, A
Multiple alignment through protein secondary-structure information
(2005) in IEEE transactions on nanobioscience
Pattini L, Merelli I, Cerutti S, Milanesi L
Representation and Modelling of Protein Surface Determinants
(2005) in IEEE transactions on nanotechnology
Romano, P; Marra, D; Milanesi, L
Web services and workflow management for biological resources
(2005) in BMC bioinformatics
Milanesi, L; Petrillo, M; Sepe, L; Boccia, A; D'Agostino, N; Passamano, M; Di Nardo, S; Tasco, G; Casadio, R; Paolella, G
Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity
(2005) in BMC bioinformatics
Lazzari, B; Caprera, A; Vecchietti, A; Stella, A; Milanesi, L; Pozzi, C
ESTree db: a tool for peach functional genomics
(2005) in BMC bioinformatics
Armano, G; Mancosu, G; Milanesi, L; Orro, A; Saba, M; Vargiu, E
A hybrid genetic-neural system for predicting protein secondary structure
(2005) in BMC bioinformatics
D'Ursi P; Salvi E; Fossa P; Milanesi L; Rovida E
Modelling the interaction of steroid receptors with endocrine disrupting chemicals
(2005) in BMC bioinformatics
Helmer-Citterich, M; Casadio, R; Guffanti, A; Mauri, G; Milanesi, L; Pesole, G; Valle, G; Saccone, C
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society
(2005) in BMC bioinformatics
Armano G., Milanesi L., and Orro A
Using Secondary Structure Information to Perform Multiple Alignmen
(2005)
Igor B. Rogozin, Boris A. Malyarchuk, Luciano Milanesi, Youri I. Pavlov.
Pavlov. From context-dependence of mutations to molecular mechanisms of mutagenesis
(2005)
Merelli I.; Morra G.; D'Agostino D.; Clematis A.; Milanesi L.
High performance workflow implementation for protein surface characterization using grid technology
(2005) in BMC bioinformatics
Rogozin, IB; Malyarchuk, BA; Pavlov, YI; Milanesi, L
From context-dependence of mutations to molecular mechanisms of mutagenesis
(2005) Biocomputing 2005 - Proceedings of the Pacific Symposium, big island hawaii, January 4-8, 2015
I. Merelli, L. Milanesi, D. D'Agostino, and A. Clematis
Using parallel isosurface extraction in superficial molecular modeling
(2005) Distributed Frameworks for Multimedia Applications, 2005. DFMA '05
Morra G., Merelli I., Koert U., Knapp E.W., Milanesi L
Molecular dynamics simulations of a small membrane channel: A distributed computing approach
(2005) BITS 2005, Milano
Armano, G; Milanesi, L; Orro, A
Using secondary structure information to perform multiple alignment
(2005) NETTAB 2004, Camerino
Paolella G., Petrillo M., Boccia A., Sepe L., Casadio R., Milanesi L
Systematic analysis of human kinase genes provides indications for a large number of alternative splicing events
(2005) BITS 2005, Milano
Rovida E., DUrsi P., Morra G., Marino F., Milanesi L.,Merati G.,Faioni E
Structural interpretation of the G216D mutation in the catalytic domain of activated protein C by computational approach
(2005) 6th European Symposium of the Protein Society, Barcellona Spain
Caprera A., Lazzari B., Vecchietti A., Stella A., Milanesi L., Pozzi C
The ESTree db as an engine for peach EST related information retrieval
(2005) BITS 2005, Milano
Merelli I., Landenna M., Milanesi L.
Biological database access and integration using Web Services in GRID technology
(2005) BITS 2005, Milano
DUrsi P., Salvi E., Fossa P., Milanesi L., Rovida E.
Modelling the interaction of steroid receptors with organic polychlorinated compounds
(2005) BITS 2005, Milano
Caristina L., Spinelli R., Finazzi D., Caprera A., Callegaro A., Bicciato S., Beltrame L., Biunno I., Milanesi L., Saltini G., Malferrari G., Galimberti D., Lovati C., Mariani C., Battaglia C.
An association study of single alzheimer candidate genes by mean allelic discrimination technology
(2005) HUGO, Santorini, Greece
Rovida E., DUrsi P., Marino F., Caprera A., , Milanesi L., Merati G.,Faioni E
3D-protein C mutation database: integration of structural, functional and clinical data of natural Protein C mutants
(2005) ISMB 2005, Michigan, USA
Merelli I., Milanesi L., DAgostino D., Clematis A., Zanneschi M, Danelutto M
Using Parallel Isosurface Extraction in Superficial Molecular Modeling
(2005) DFMA 2005, Besançon, France
Merelli I, Morra G, Milanesi L
Bioinformatics Workflow using ASSIST on GRID
(2005) NETTAB 2005, Napoli
Merelli I, Milanesi L, Pattini L, Cerutti S
Amino Acids Surface Patterns in Protein Domain functionality Analysis
(2005)
Merelli I, Milanesi L
High Performance Implementation for Protein Domain Search using the GRID Platform
(2005) Virtual Genomics Conference, Washington DC, USA
Armano G., Milanesi L., Orro A.
An Agent Approach to High Level Workflow Management in Functional Genomics
(2005)
Ermanna Rovida1, Pasqualina DUrsi1, Francesca Marino1, Andrea Caprera1, Luciano Milanesi1,
3D-PROTEIN C MUTATION DATABASE: INTEGRATION OF STRUCTURAL, FUNCTIONAL AND
(2005) ISMB 2005, Detroit, USA
Pasqualina DUrsi(1), Erika Salvi(1), Paola Fossa(2), Luciano Milanesi(1), Ermanna Rovida(1)
MODELLING THE INTERACTION OF STEROID RECEPTORS WITH ORGANIC POLYCHLORINATED COMPOUNDS
(2005) BITS 2005, 17-19 March 2005, Milano
Ermanna Rovida1, Pasqualina DUrsi1, Giulia Morra1, Francesca Marino1, Luciano Milanesi1, Giuliana Merati2, Elena Faioni3
STRUCTURAL INTERPRETATION OF THE G216D MUTATION IN THE CATALYTIC DOMAIN OF ACTIVATED PROTEIN C BY COMPUTATIONAL APPROACH.
(2005) VIth European Symposium of The Protein Society, Barcelona, Spain
Milanesi L., Passamano M., DAgostino N., Caprera A.
InterproScan Automated Analysis for Functional Proteine Kinase Domains Detection
(2004) NETTAB 2004, Napoli
Passamano M., DAgostino N., Caprera A., Milanesi L
Comprehensive for the management, of Protein Kinase Domains
(2004) BITS 2004, Padova
Milanesi L., Merelli I.
Modelling of protein surface to identify and analyze functional determinants using GRID technologies
(2004) AgentLink III, Technical Forum I, Roma
Lazzari B, Milanesi L., Stella A., Caprera A., Bianchi F., Vecchietti A., Pozzi C
ESTree DB: a Tool for Peach Functional Genomici
(2004) BITS 2004, Padova
Milanesi L., Merelli I., Pattini L., Cerutti S
Representation and Modelling of Protein Surface Determinants
(2004) The Fourth Iternational Conference in Bioinformatics of Genome Regulation and Structure, Novosibisk Russia
DUrsi P., Rovida E., Merati G., Biguzzi E., Caprera A., Milanesi L., Faioni E.
Computational analysis of naturally occurring protein C mutants: electrostatic properties implications.
(2004) Bioinformatics Italian Society Meeting (BITS 2004), Padova
Milanesi L. and Rogozin I.B.
System for Expressed Sequence Tags, Mapping on Genomic Sequences.
(2003) in IEEE transactions on nanobioscience
Rogozin, Igor B.; Babenko, Vladimir N.; Milanesi, Luciano; Pavlov, Youri I.
Computational analysis of mutation spectra.
(2003) in Briefings in bioinformatics
Milanesi, L; Rogozin, IB
ESTMAP: A system for expressed sequence tags mapping on genomic sequences
(2003) in IEEE transactions on nanobioscience
Valuev, VP; Afonnikov, DA; Ponomarenko, MP; Milanesi, L; Kolchanov, NA
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro
(2002) in Nucleic acids research
Rogozin, IB; Kochetov, AV; Kondrashov, FA; Koonin, EV; Milanesi, L
Presence of ATG triplets in 5 ' untranslated regions of eukaryotic cDNAs correlates with 'weak' context of the start codon
(2001) in Bioinformatics (Oxf., Print)
Milanesi, L; D'Angelo, D; Rogozin, IB
GeneBuilder: interactive in silico prediction of gene structure
(1999) in Bioinformatics (Oxf., Print)
Rogozin, IB; D'Angelo, D; Milanesi, L
Protein-coding regions prediction combining similarity searches and conservative evolutionary properties of protein-coding sequences
(1999) in Gene (Amst.)
Glazko, GB; Milanesi, L; Rogozin, IB
The subclass approach for mutational spectrum analysis: Application of the SEM algorithm
(1998) in Journal of theoretical biology
Campi, MG; Romano, P; Milanesi, L; Marra, D; Manniello, MA; Iannotta, B; Rondanina, G; Grasso, E; Ruzzon, T; Santi, L
Molecular Probe Data base (MPDB)
(1998) in Nucleic acids research
Milanesi, Luciano; Rogozin, Igor B.
Prediction of human gene structure
(1998) Academic Press, London (Regno Unito) in Guide to Human Genome Computing, 1998
Rogozin, IB; Milanesi, L
Analysis of donor splice sites in different eukaryotic organisms
(1997) in Journal of molecular evolution
P. Arrigo; A. Corana; L. Milanesi
Entropies and word frequencies in the Eukaryotic Promoter Database
(1997) The ACM International Conference on Supercomputing (ICS'97), Workshop 'Molecular Bioinformatics: Sequence Analysis - The Human Genome Project', Vienna (Austria), 7/7/1997
Faranda, S; Frattini, A; Zucchi, I; Patrosso, C; Milanesi, L; Montagna, C; Vezzoni, P
Characterization and fine localization of two new genes in Xq28 using the genomic sequence EST database screening approach
(1996) in Genomics (S. Diego Calif.)
Rogozin, IB; Milanesi, L; Kolchanov, NA
Gene structure prediction using information on homologous protein sequence
(1996) in Computer applications in the biosciences (Print)
L. Milanesi, M. Muselli, P. Arrigo
Hamming-Clustering method for signal prediction in 5' and 3' regions of eukaryotic genes
(1996) in Computer applications in the biosciences (Print)
P. Arrigo, M. Muselli, L. Milanesi
Applicazioni di classificatori neurali all'analisi del genoma umano
(1995) Congresso Nazionale dell'Associazione Italiana per l'Informatica ed il Calcolo Automatico (AICA 95), Chia, Cagliari, Italy
P. Arrigo,F.Giuliano,L.Milanesi
The analysis of k-tuple distribution in the eukaryotic promoter database using the winner-take-all system
(1995) Third International Conference on Bioinformatics and Genome Research, Tallahassee (Florida), june 1-4 1994
L. Milanesi, P. Arrigo, M. Muselli
Recognition of poly-A signals with Hamming Clustering
(1995) in Bioinformatics & Genome Research, 1995
PATROSSO, MC; REPETTO, M; VILLA, A; MILANESI, L; FRATTINI, A; FARANDA, S; MANCINI, M; MAESTRINI, E; TONIOLO, D; VEZZONI, P
THE EXON-INTRON ORGANIZATION OF THE HUMAN X-LINKED GENE (FLN1) ENCODING ACTIN-BINDING PROTEIN-280
(1994) in Genomics (S. Diego Calif.)
Solovyev, Victor V.; Lim, Hwa A.; Milanesi, Luciano; Lawrence, Charles
Applications of fractal representation of genetic texts for recognition of genome functional and coding regions
(1993) 2nd International Conference Florida, USA, Tallahassee, FL, USA, 1993
Solovyev, Victor; Streletc, Victor; Milanesi, Luciano
Multiple sequence alignments based on new approaches of tree construction and sequence comparison
(1993) 2nd International Conference Florida, USA, Tallahassee, FL, USA, 1993
Tribioli C, Tamanini F, Patrosso C, Milanesi L, Villa A, Pergolizzi R, Maestrini E, Rivella S, Bione S, Mancini M, Vezzoni P, Toniolo D.
Methylation and sequence analysis around EagI sites: identification of 28 new CpG islands in XQ24-XQ28.
(1992) in Nucleic acids research
GILARDI M C; BETTINARDI V; TOOD-POKROPEK A; MILANESI L; FAZIO F
ASSESSMENT AND COMPARISON OF THREE SCATTER CORRECTION TECHNIQUES IN SINGLE PHOTON EMISSION COMPUTED TOMOGRAPHY
(1988) in The Journal of nuclear medicine (1978)