Andreas Gisel

The information published in this page are entirely managed by ANDREAS GISEL who is completely responsible for it.

Andreas Gisel is a Bioinformatician with a Diploma and PhD in Natural Science (specialized in Molecular Biology) from the Swiss Federal Institute of Technology Zürich, Switzerland. He has more than 10 years' experience in molecular biology accumulated during his PhD, working for 4 years at UC Berkeley, USA and 2 years at Friedrich Miescher Institute (a Novartis foundation) in Basel, Switzerland. Over time he specialized in bioinformatics working at Novartis SA in Basel, Switzerland, focusing on cancer research and last at the Institute for Biomedical Technologies, Bari, Italy, specializing in plant-virus interaction. Over the last 20 years he developed skills in Next Generation Sequence data analysis, biological databases, and also has a long-standing experience in teaching. He was working for 3 years at the International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria and continues offering consultancy up to date. During this time at IITA he has been working with cassava, yam, and maize on gene expression analysis. He was responsible for several projects on cassava improvement and looking at molecular features to propose biotechnological approaches to increase yield, starch content, and virus resistance and to improve food quality by biofortification.

Interest areas:

NGS data analysis such as: - whole genome resequencing and assembly - RNA-seq data analysis including gene expression, alternative splicing and allele specific expression - small noncoding RNA data analysis - DNA methylation analysis


Contacts

Phone: 080 5929662

International Ids


H-indexes

Google Scholar H-Index: 23
Scopus H-Index: 19
ISI-WoS H-Index: 18

Research activities classification (ERC)

BIOINFORMATICS
COMPUTATIONAL BIOLOGY
EPIGENETICS AND GENE REGULATION
GENETICS, GENOMICS, BIOINFORMATICS AND SYSTEMS BIOLOGY: GENETICS, POPULATION GENETICS, MOLECULAR GENETICS, GENOMICS, TRANSCRIPTOMICS, PROTEOMICS, METABOLOMICS, BIOINFORMATICS, COMPUTATIONAL BIOLOGY, BIOSTATISTICS, BIOLOGICAL MODELLING AND SIMULATION, SYSTEMS BIOLOGY, GENETIC EPIDEMIOLOGY
LIFE SCIENCES
TRANSCRIPTOMICS

Research products

David Rüscher and José María Corral García and Anna Vittoria Carluccio and Patrick A W Klemens and Andreas Gisel and Livia Stavolone and Ekkehard Neuhaus and Frank Ludewig and Uwe Sonnewald and Wolfgang Zierer

Auxin signaling and vascular cambium formation enables storage metabolism in cassava tuberous roots

(2021) in Journal of experimental botany (Online)
Navarro B., Gisel A., Serra P., Chiumenti M., Di Serio F., Flores R.

Degradome analysis of tomato and nicotiana benthamiana plants infected with potato spindle tuber viroid

(2021) in International journal of molecular sciences (Print)
Oluwasanya D.N.; Gisel A.; Stavolone L.; Setter T.L.

Environmental responsiveness of flowering time in cassava genotypes and associated transcriptome changes

(2021) in PloS one
Oluwasanya, Deborah N, Gisel, Andreas, Stavolone, Livia, Setter, Tim L

Environmental responsiveness of flowering time in cassava genotypes and associated transcriptome changes

(2021) in bioRxiv the preprint server for biology
Obata T., Klemens P.A.W., Rosado-Souza L., Schlereth A., Gisel A., Stavolone L., Zierer W., Morales N., Mueller L.A., Zeeman S.C., Ludewig F., Stitt M., Sonnewald U., Neuhaus H.E., Fernie A.R.

Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield

(2020) in Plant journal (Print)
Toshihiro Obata Patrick A.W. Klemens Laise Rosado-Souza Armin Schlereth Andreas Gisel* Livia Stavolone* Wolfgang Zierer Nicolas Morales Lukas A. Mueller Samuel C. Zeeman Frank Ludewig Mark Stitt Uwe Sonnewald H. Ekkehard Neuhaus Alisdair R. Fernie

Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield

Toshihiro Obata Patrick A.W. Klemens Laise Rosado-Souza Armin Schlereth Andreas Gisel* Livia Stavolone* Wolfgang Zierer Nicolas Morales Lukas A. Mueller Samuel C. Zeeman Frank Ludewig Mark Stitt Uwe Sonnewald H. Ekkehard Neuhaus (2019) in Plant journal (Online)
Chisom Ezekannagha, Andreas Gisel, Angela Makolo

A Computational Pipeline for Genome Annotation and Metabolic Pathway Reconstruction in Plants (A case study of Cassava)

(2019) First Nigerian Bioinformatics Conference (FNBC), Lagos, Nigeria, 06/25/2019, 06/26/2019
Temitayo Olagunju, Chisom Ezekannagha, Damilola Dada, Ismail Rabbi, Melaku Gedil, Livia Stavolone, Andreas Gisel

In depth investigation of gene regulation mechanisms for virus defense in Cassava

(2019) First Nigerian Bioinformatics Conference (FNBC), Lagos, Nigeria, 06/25/2019, 06/26/2019
Temitayo A. Olagunju, Angela U. Makolo, Andreas Gisel

Multi-layer Networks: Prospects in Study of Small RNA-mediated Gene Regulatory Network of Cassava in Diseased Condition

(2019) First Nigerian Bioinformatics Conference (FNBC),, Lagos, Nigeria, 06/25/2019,-06/26/2019
Brandon H; Raheemat SO; Carluccio AV; David L; Abdulsalam T; Stavolone L; Gisel A

Dissecting cassava root bulking

(2017) THE 13TH INTERNATIONAL SYMPOSIUM OF THE INTERNATIONAL SOCIETY FOR TROPICAL ROOT CROPS-AFRICA BRANCH (ISTRC-AB);, Dar Salam, Tanzania, 03/05/2017, 03/10/2017
Visualize all the publications (since 2016)