The information published in this page are entirely managed by GIANLUCA DE BELLIS who is completely responsible for it.
My main interest is in the DNA analysis technologies and applications. Since 2004 I am involved in Next Generation Sequencing technologies and applications
Interest areas:
Next Generation Sequencing, NGS Data Analysis, DNA analysis
Contacts
E-mail: gianluca.debellis@cnr.it
Address: Via Fratelli cervi 93
H-indexes
Google Scholar H-Index: 45
ISI-WoS H-Index: 35
Experience
Company: CNR - Consiglio Nazionale delle Ricerche |
Education
Universita' degli Studi di Milano Grade: 110 e/110 Graduation date: 1987-03-13 |
Languages
| Production | Understanding | ||||
| Written | Oral | Written | Oral | Notes | |
| English - Full professional proficiency | B2 | B2 | B2 | B2 | |
Research activities classification (ERC)
GENETICS, GENOMICS, BIOINFORMATICS AND SYSTEMS BIOLOGY: GENETICS, POPULATION GENETICS, MOLECULAR GENETICS, GENOMICS, TRANSCRIPTOMICS, PROTEOMICS, METABOLOMICS, BIOINFORMATICS, COMPUTATIONAL BIOLOGY, BIOSTATISTICS, BIOLOGICAL MODELLING AND SIMULATION, SYSTEMS BIOLOGY, GENETIC EPIDEMIOLOGY
LIFE SCIENCES
Curriculum Vitae
Research products
Rossi, Daniela; Gigli, Lorenzo; Gamberucci, Alessandra; Bordoni, Roberta; Pietrelli, Alessandro; Lorenzini, Stefania; Pierantozzi, Enrico; Peretto, Giovanni; De Bellis, Gianluca; Della Bella, Paolo; Ferrari, Maurizio; Sorrentino, Vincenzo; Benedetti, Sara; Sala, Simone; Di Resta, Chiara
A novel homozygous mutation in the TRDN gene causes a severe form of pediatric malignant ventricular arrhythmia
(2020) in Heart rhythm
Puccio S.; Grillo G.; Consiglio A.; Soluri M.F.; Sblattero D.; Cotella D.; Santoro C.; Liuni S.; Bellis G.; Lugli E.; Peano C.; Licciulli F.
InteractomeSeq: a web server for the identification and profiling of domains and epitopes from phage display and next generation sequencing data
(2020) in Nucleic acids research (Online)
Rossi D1, Gigli L2, Gamberucci A1, Bordoni R3, Pietrelli A3, Lorenzini S1, Pierantozzi E1, Peretto G2, De Bellis G3, Della Bella P2, Ferrari M4, Sorrentino V1, Benedetti S5, Sala S2, Di Resta C6.
A novel homozygous mutation in the TRDN gene causes a severe form of pediatric malignant ventricular arrhythmia
(2019) in Heart rhythm
Battaglia, Cristina; Venturin, Marco; Sojic, Aleksandra; Jesuthasan, Nithiya; Orro, Alessandro; Spinelli, Roberta; Musicco, Massimo; De Bellis, Gianluca; Adorni, Fulvio
Candidate Genes and MiRNAs Linked to the Inverse Relationship Between Cancer and Alzheimer's Disease: Insights From Data Mining and Enrichment Analysis
(2019) in Frontiers in genetics
Barichella M, Severgnini M, Cilia R, Cassani E, Bolliri C, Caronni S, Ferri V, Cancello R, Ceccarani C, Faierman S, Pinelli G, De Bellis G, Zecca L, Cereda E, Consolandi C, Pezzoli G.
Unraveling gut microbiota in Parkinson's disease and atypical parkinsonism
(2019) in Movement disorders
Gemma Macchia, Marco Severgnini, Stefania Purgato, Doron Tolomeo, Hilen Casciaro, Ingrid Cifola, Alberto L'Abbate, Anna Loverro, Orazio Palumbo, Massimo Carella, Laurence Bianchini, Giovanni Perini, Gianluca De Bellis, Fredrik Mertens, Mariano Rocchi and Clelia T. Storlazzi
The Hidden Genomic and Transcriptomic Plasticity of Giant Marker Chromosomes in Cancer
(2018) in Genetics (Austin Tex., Online)
Talà A, Damiano F, Gallo G, Pinatel E, Calcagnile M, Testini M, Fico D, Rizzo D, Sutera A, Renzone G, Scaloni A, De Bellis G, Siculella L, De Benedetto GE, Puglia AM, Peano C, Alifano P.
Pirin: a novel redox-sensitive modulator of primary and secondary metabolism in Streptomyces.
(2018) in Metabolic engineering (Print)
Genovese L.M.; Geraci F.; Corrado L.; Mangano E.; D'Aurizio R.; Bordoni R.; Severgnini M.; Manzini G.; De Bellis G.; D'Alfonso S.; Pellegrini M.
A census of tandemly repeated polymorphic loci in genic regions through the comparative integration of human genome assemblies
(2018) in Frontiers in genetics
Yannick Lara, Annick Wilmotte, Karina Sivonen, Gianluca De Bellis, Pirjo Kuuppo, Stefano Ventura, Beatrice Montarani, Peter Henderson, Lucien Hoffmann, Maciej Zalewski & Jiri Komárek
Metadata compilation for the MIDI-CHIP dataset
(2018) in Freshwater Metadata Journal
Fulvio Adorni, Aleksandra Sojic, Nithiya Jesuthasan, Cristina Battaglia, Alessandro Orro, Gianluca De Bellis, and Massimo Musicco
A combination of top-down and bottom-up approaches addressing the inverse occurrence of Alzheimer's disease and cancer enables to classify patients based on their genotypes
(2018) 54° Congresso Associazione Italiana Neuropatologia e Neurobiologia Clinica, e 44° Congresso Associazione Italiana Ricerca Invecchiamento Cerebrale, Milano, Istituto di Ricerche Farmacologiche Mario Negri, 17-19/05/2018
Aleksandra Sojic, Nithiya Jesuthasan, Cristina Battaglia, Alessandro Orro, Gianluca De Bellis, Federica Prinelli, and Fulvio Adorni, Massimo Musicco
Combining epidemiological and in silico investigations to elucidate the genetic basis of the inverse occurrence between Alzheimer's disease and cancer
(2018) XIII Congresso Nazionale Sindem, Firenze, 19-21/04/2018
A ?Abbate, D Tolomeo, I Cifola, M Severgnini, A Turchiano, B Augello, G Squeo, P D´Addabbo, D Traversa, G Daniele, A Lonoce, M Pafundi, M Carella, O Palumbo, A Dolnik, D Muehlematter, J Schoumans, N Van Roy, G De Bellis, G Martinelli, G Merla, L Bullinger, C Haferlach & C T Storlazzi
MYC-containing amplicons in acute myeloid leukemia: Genomic structures, evolution, and transcriptional consequences
(2017) in Leukemia
Romano, Oriana; Cifola, Ingrid; Poletti, Valentina; Severgnini, Marco; Peano, Clelia; De Bellis, Gianluca; Mavilio, Fulvio; Miccio, Annarita
Retroviral Scanning: Mapping MLV Integration Sites to Define Cell-specific Regulatory Regions.
(2017) in Journal of visualized experiments
Mennonna D.; Maccalli C.; Romano M.C.; Garavaglia C.; Capocefalo F.; Bordoni R.; Severgnini M.; De Bellis G.; Sidney J.; Sette A.; Gori A.; Longhi R.; Braga M.; Ghirardelli L.; Baldari L.; Orsenigo E.; Albarello L.; Zino E.; Fleischhauer K.; Mazzola G.; Ferrero N.; Amoroso A.; Casorati G.; Parmiani G.; Dellabona P.
T cell neoepitope discovery in colorectal cancer by high throughput profiling of somatic mutations in expressed genes
(2017) in Gut
Vannini, Andrea; Pinatel, Eva; Costantini, Paolo Emidio; Pelliciari, Simone; Roncarati, Davide; Puccio, Simone; De Bellis, Gianluca; Peano, Clelia; Danielli, Alberto
Comprehensive mapping of the Helicobacter pylori NikR regulon provides new insights in bacterial nickel responses
(2017) in Scientific reports (Nature Publishing Group)
Puccio, Simone; Grillo, Giorgio; Licciulli, Flavio; Severgnini, Marco; Liuni, Sabino; Bicciato, Silvio; De Bellis, Gianluca; Ferrari, Francesco; Peano, Clelia
WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes.
(2017) in Nucleic acids research
Modi, Alessandra; Tassi, Francesca; Susca, Roberta Rosa; Vai, Stefania; Rizzi, Ermanno; De Bellis, Gianluca; Luglie, Carlo; Fortes, Gloria Gonzalez; Lari, Martina; Barbujani, Guido; Caramelli, David; Ghirotto, Silvia
Complete mitochondrial sequences from Mesolithic Sardinia
(2017) in Scientific reports (Nature Publishing Group)
Pelliciari, Simone; Pinatel, Eva; Vannini, Andrea; Peano, Clelia; Puccio, Simone; De Bellis, Gianluca; Danielli, Alberto; Scarlato, Vincenzo; Roncarati, Davide
Insight into the essential role of the Helicobacter pylori HP1043 orphan response regulator: genome-wide identification and characterization of the DNA-binding sites
(2017) in Scientific reports (Nature Publishing Group)
Fondi, Marco; Pinatel, Eva; Tala, Adelfia; Damiano, Fabrizio; Consolandi, Clarissa; Mattorre, Benedetta; Fico, Daniela; Testini, Mariangela; De Benedetto, Giuseppe E.; Siculella, Luisa; De Bellis, Gianluca; Alifano, Pietro; Peano, Clelia
Time-Resolved Transcriptomics and Constraint-Based Modeling Identify System-Level Metabolic Features and Overexpression Targets to Increase Spiramycin Production in Streptomyces ambofaciens
(2017) in Frontiers in microbiology
Lara, Y., Wilmotte, A., Boutte, C., Grubisic, S., Balthasart, P., De Bellis, G., Castiglioni, B., Rizzi, E., Frosini, A., Sivonen, K., Rajaniemi, P., Rantala, A., Kuuppo, P., Lepistö, L., Ventura, S., Mugnai, M.A., Turichia, S., Tedioli, G., Henderson, P., Seaby, R., Hoffmann, L., Willame, R., Komarek, J., Komárková, J., Hrouzek, P., Zalewski, M., Tarczynska, M., Mankiewicz, J., Zydorczyk, K. & Jurczak, T.
MIcrobial DIversity CHIP database
(2017)
Sorosina, M.; Barizzone, N.; Clarelli, F.; Anand, S.; Lupoli, S.; Esposito, F.; Mangano, E.; Bordoni, R.; Martinelli, V.; Comi, G.; Leone, M.; Cusi, D.; Patsopoulos, N.; De Jager, P.; De Bellis, G.; D'Alfonso, S.; Boneschi, F. Martinelli
Identification and characterization of multiple sclerosis associated loci in the continental italian population
(2016) 32th Congress of the European-Committee-for-Treatment-and-Research-in-Multiple-Sclerosis (ECTRIMS), London, ENGLAND, SEP 14-17, 2016
Del Grosso, Maria; Camilli, Romina; Rizzi, Ermanno; Rizzi, Ermanno; Pietrelli, Alessandro; Pietrelli, Alessandro; De Bellis, Gianluca; Pantosti, Annalisa
ICESpy009, a conjugative genetic element carrying mef(E) in Streptococcus pyogenes
(2016) in Antimicrobial agents and chemotherapy (Print)
Parajuli, Anirudra; Kwak, Daniel H.; Dalponte, Luca; Dalponte, Luca; Leikoski, Niina; Galica, Tomas; Galica, Tomas; Galica, Tomas; Umeobika, Ugochukwu; Trembleau, Laurent; Bent, Andrew; Sivonen, Kaarina; Wahlsten, Matti; Wang, Hao; Rizzi, Ermanno; De Bellis, Gianluca; Naismith, James; Jaspars, Marcel; Liu, Xinyu; Houssen, Wael; Houssen, Wael; Houssen, Wael; Fewer, David Peter
A Unique Tryptophan C-Prenyltransferase from the Kawaguchipeptin Biosynthetic Pathway
(2016) in Angewandte Chemie (Int. ed., Print)
Anand, Santosh; Anand, Santosh; Anand, Santosh; Mangano, Eleonora; Barizzone, Nadia; Barizzone, Nadia; Bordoni, Roberta; Sorosina, Melissa; Clarelli, Ferdinando; Corrado, Lucia; Corrado, Lucia; Boneschi, Filippo Martinelli; Boneschi, Filippo Martinelli; D'Alfonso, Sandra; D'Alfonso, Sandra; De Bellis, Gianluca
Next generation sequencing of pooled samples: Guideline for variants' filtering
(2016) in Scientific reports (Nature Publishing Group)
Cavazza, Alessia; Miccio, Annarita; Romano, Oriana; Petiti, Luca; Tagliazucchi, Guidantonio Malagoli; Peano, Clelia; Severgnini, Marco; Rizzi, Ermanno; De Bellis, Gianluca; Bicciato, Silvio; Mavilio, Fulvio
Dynamic Transcriptional and Epigenetic Regulation of Human Epidermal Keratinocyte Differentiation
(2016) in Stem Cell Reports
Romano, Oriana; Peano, Clelia; Tagliazucchi, Guidantonio Malagoli; Petiti, Luca; Poletti, Valentina; Cocchiarella, Fabienne; Rizzi, Ermanno; Severgnini, Marco; Cavazza, Alessia; Rossi, Claudia; Pagliaro, Pasqualepaolo; Ambrosi, Alessandro; Ferrari, Giuliana; Bicciato, Silvio; De Bellis, Gianluca; Mavilio, Fulvio; Miccio, Annarita
Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment
(2016) in Scientific reports (Nature Publishing Group)
Consolandi, Clarissa; Turroni, Silvia; Emmi, Giacomo; Severgnini, Marco; Fiori, Jessica; Peano, Clelia; Biagi, Elena; Grassi, Alessia; Rampelli, Simone; Silvestri, Elena; Centanni, Manuela; Cianchi, Fabio; Gotti, Roberto; Emmi, Lorenzo; Brigidi, Patrizia; Bizzaro, Nicola; De Bellis, Gianluca; Prisco, Domenico; Prisco, Domenico; Candela, Marco; D'Elios, Mario M.; D'Elios, Mario M.
Behçet's syndrome patients exhibit specific microbiome signature
(2015) in Autoimmunity reviews
Di Resta, Chiara; Pietrelli, Alessandro; Pietrelli, Alessandro; Sala, Simone; Bella, Paolo Della; De Bellis, Gianluca; Ferrari, Maurizio; Ferrari, Maurizio; Ferrari, Maurizio; Bordoni, Roberta; Benedetti, Sara
High-throughput genetic characterization of a cohort of Brugada syndrome patients
(2015) in Human molecular genetics (Print)
Shishido, Tani K.; Jokela, Jouni; Kolehmainen, Clara Theresia; Fewer, David P.; Wahlsten, Matti; Wang, Hao; Rouhiainen, Leo; Rizzi, Ermanno; De Bellis, Gianluca; Permic, Perttu; Permic, Perttu; Sivonena, Kaarina
Antifungal activity improved by coproduction of cyclodextrins and anabaenolysins in Cyanobacteria
(2015) in Proceedings of the National Academy of Sciences of the United States of America
Peano, Clelia; Wolf, Johannes; Demol, Julien; Demol, Julien; Rossi, Elio; Petiti, Luca; De Bellis, Gianluca; Geiselmann, Johannes; Geiselmann, Johannes; Egli, Thomas; Lacour, Stephan; Lacour, Stephan; Landini, Paolo
Characterization of the escherichia coli ?S core regulon by chromatin immunoprecipitation-sequencing (ChIP-seq) analysis
(2015) in Scientific reports (Nature Publishing Group)
Fazio, Grazia (a); Daniele, Giulia (b); Cazzaniga, Valeria (a); Impera, Luciana (c); Severgnini, Marco (d); Iacobucci, Ilaria (e); Galbiati, Marta (a); Leszl, Anna (f); Cifola, Ingrid (d); De Bellis, Gianluca (d); Bresciani, Paola (g); Martinelli, Giovanni (e); Basso, Giuseppe (f); Biondi , Andrea (a); Storlazzi, Clelia Tiziana (b); Cazzaniga, Giovanni (a)
Three novel fusion transcripts of the paired box 5 gene in B-cell precursor acute lymphoblastic leukemia.
(2015) in Haematologica (Roma)
Lari, Martina; Di Vincenzo, Fabio; Borsato, Andrea; Ghirotto, Silvia; Micheli, Mario; Balsamo, Carlotta; Collina, Carmine; De Bellis, Gianluca; Frisia, Silvia; Giacobini, Giacomo; Gigli, Elena; Gigli, Elena; Hellstrom, John C.; Lannino, Antonella; Modi, Alessandra; Pietrelli, Alessandro; Pilli, Elena; Profico, Antonio; Ramirez, Oscar; Rizzi, Ermanno; Vai, Stefania; Venturo, Donata; Piperno, Marcello; Lalueza-Fox, Carles; Barbujani, Guido; Barbujani, Guido; Caramelli, David; Manzi, Giorgio
The Neanderthal in the karst: First dating, morphometric, and paleogenetic data on the fossil skeleton from Altamura (Italy)
(2015) in Journal of Human Evolution
Poletti V.; Carri A.D.; Tagliazucchi G.M.; Faedo A.; Petiti L.; Mazza E.M.C.; Peano C.; De Bellis G.; Bicciato S.; Miccio A.; Cattaneo E.; Mavilio F.
Genome-wide definition of promoter and enhancer usage during neural induction of human embryonic stem cells
(2015) in PloS one
Castellano, Leandro; Rizzi, Ermanno; Krell, Jonathan; Di Cristina, Manlio; Galizi, Roberto; Mori, Ayako; Tam, Janis; De Bellis, Gianluca; Stebbing, Justin; Crisanti, Andrea; Crisanti, Andrea; Nolan, Tony
The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
(2015) in BMC genomics
Clelia Peano, Johannes Wolf, Julien Demol, Elio Rossi, Luca Petiti, Gianluca De
Bellis, Johannes Geiselmann, Thomas Egli, Stephan Lacour & Paolo Landini
Characterization of the Escherichia coli ?S core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis
Clelia Peano, Johannes Wolf, Julien Demol, Elio Rossi, Luca Petiti, Gianluca De
(2015) in Scientific reports (Nature Publishing Group)
Biagi, E.; Zama, D.; Nastasi, C.; Consolandi, C.; Fiori, J.; Rampelli, S.; Turroni, S.; Centanni, M.; Severgnini, M.; Peano, C.; De Bellis, G.; Basaglia, G.; Gotti, R.; Masetti, R.; Pession, A.; Brigidi, P.; Candela, M.
Gut microbiota trajectory in pediatric patients undergoing hematopoietic SCT
(2015) in Bone marrow transplantation (Basingstoke)
Cifola, Ingrid; Lionetti, Marta; Pinatel, Eva; Todoerti, Katia; Mangano, Eleonora; Pietrelli, Alessandro; Fabris, Sonia; Mosca, Laura; Simeon, Vittorio; Petrucci, Maria Teresa; Morabito, Fortunato; Offidani, Massimo; Di Raimondo, Francesco; Falcone, Antonietta; Caravita, Tommaso; Battaglia, Cristina; De Bellis, Gianluca; Palumbo, Antonio; Musto, Pellegrino; Neri, Antonino
Whole-exome sequencing of primary plasma cell leukemia discloses heterogeneous mutational patterns
(2015) in Oncotarget
Tocchetti, Arianna; Bordoni, Roberta; Gallo, Giuseppe; Petiti, Luca; Corti, Giorgio; Alt, Silke; Cruz, Joao C. S.; Salzano, Anna Maria; Scaloni, Andrea; Puglia, Anna Maria; De Bellis, Gianluca; Peano, Clelia; Donadio, Stefano; Sosio, Margherita
A Genomic, Transcriptomic and Proteomic Look at the GE2270 Producer Planobispora rosea, an Uncommon Actinomycete
(2015) in PloS one
Patrucco L, Peano C, Chiesa A, Guida F, Luisi I, Boria I, Mignone F, De Bellis G, Zucchelli S, Gustincich S, Santoro C, Sblattero D, Cotella D.
Identification of novel proteins binding the AU-rich element of ?-prothymosin mRNA through the selection of open reading frames (RIDome)
(2015) in RNA biology (Online)
Daniele Mennonna1,10, Cristina Maccalli2,10, Michele C. Romano1, Filippo Capocefalo2, Roberta Bordoni3, Gianluca De Bellis3, John Sidney4, Alessandro Sette4, Alessandro Gori5, Renato Longhi5, Luca Ghirardelli6, Ludovica Baldari6, Elena Orsenigo6, Marco Braga6, Luca Albarello7, Elisabetta Zino8, Katharina Fleischhauer8, Gina Mazzola9, Norma Ferrero9, Antonio Amoroso9, Giulia Casorati1, Giorgio Parmiani2, Paolo Dellabona1
T cell neo-epitope discovery in colorectal cancer by high throughput profiling of somatic mutations in expressed genes
(2015) in Gut
Barizzone, N.; Anand, S.; Sorosina, M.; Mangano, E.; Bordoni, R.; Clarelli, F.; Esposito, F.; Raymkulova, O.; Predebon, G.; Martinelli, V.; Comi, G.; Leone, M.; De Bellis, G.; Boneschi, F. Martinelli; D'Alfonso, S.
Target resequencing of regions associated with multiple sclerosis in the Italian population
(2014) Joint ACTRIMS-ECTRIMS Meeting, Boston, MA, 10-13/09/2014
Fazio, Grazia; Severgnini, Marco; Cifola, Ingrid; Bungaro, Silvia; Biondi, Andrea; De Bellis, Gianluca; Cazzaniga, Giovanni
Structural Variations Identified By Whole Transcriptome Sequencing (RNA-Seq) in Childhood ALL with Different Response to Therapy
(2014) in Blood
Fondi, Marco (a); Orlandini, Valerio (a); Corti, Giorgio(b); Severgnini, Marco(b); Galardini, Marco (a); Pietrelli, Alessandro (b); Fuligni, Fabio(b); Iacono, Michele(b); Rizzi, Ermanno(b); De Bellis, Gianluca(b); Fani, Renato(a)
Enly: Improving Draft Genomes through Reads Recycling.
(2014) in Journal of Genomics
Schnorr, Stephanie L.; Candela, Marco; Rampelli, Simone; Centanni, Manuela; Consolandi, Clarissa; Basaglia, Giulia; Turroni, Silvia; Biagi, Elena; Peano, Clelia; Severgnini, Marco; Fiori, Jessica; Gotti, Roberto; De Bellis, Gianluca; Luiselli, Donata; Brigidi, Patrizia; Mabulla, Audax; Marlowe, Frank; Henry, Amanda G.; Crittenden, Alyssa N.
Gut microbiome of the Hadza hunter-gatherers
(2014) in Nature communications
Moiani, Arianna; Suerth, Julia Debora; Gandolfi, Francesco; Rizzi, Ermanno; Severgnini, Marco; De Bellis, Gianluca; Schambach, Axel; Mavilio, Fulvio
Genome-wide analysis of alpharetroviral integration in human hematopoietic stem/progenitor cells.
(2014) in Genes (Oxf.)
Peano, Clelia; Chiaramonte, Fabrizio; Motta, Sara; Pietrelli, Alessandro; Jaillon, Sebastien; Rossi, Elio; Consolandi, Clarissa; Champion, Olivia L.; Michell, Stephen L.; Freddi, Luca; Falciola, Luigi; Basilico, Fabrizio; Garlanda, Cecilia; Mauri, Pierluigi; De Bellis, Gianluca; Landini, Paolo
Gene and Protein Expression in Response to Different Growth Temperatures and Oxygen Availability in Burkholderia thailandensis
(2014) in PloS one
Deligios, M; Bacciu, D; Deriu, E; Corti, G; Bordoni, R; De Bellis, G; Leori, G S; Rubino, S; Uzzau, S
Draft Genome Sequence of the Host-Restricted Salmonella enterica Serovar Abortusovis Strain SS44.
(2014) in genome announcements
Peano C.; Damiano F.; Forcato M.; Pietrelli A.; Palumbo C.; Corti G.; Siculella L.; Fuligni F.; Tagliazucchi G.M.; De Benedetto G.E.; Bicciato S.; De Bellis G.; Alifano P.
Comparative genomics revealed key molecular targets to rapidly convert a reference rifamycin-producing bacterial strain into an overproducer by genetic engineering
(2014) in Metabolic engineering (Print)
Olivieri, Cristina; Marota, Isolina; Rizzi, Ermanno; Ermini, Luca; Fusco, Letizia; Pietrelli, Alessandro; De Bellis, Gianluca; Rollo, Franco Ugo; Luciani, Stefania
Positioning the red deer (Cervus elaphus) hunted by the Tyrolean Iceman into a mitochondrial DNA phylogeny
(2014) in PloS one
L'Abbate, Alberto; Macchia, Gemma; D'Addabbo, Pietro; Lonoce, Angelo; Tolomeo, Doron; Trombetta, Domenico; Kok, Klaas; Bartenhagen, Christoph; Whelan, Christopher W.; Palumbo, Orazio; Severgnini, Marco Centanni Marco; Cifola, Ingrid; Dugas, Martin; Carella, Massimo; De Bellis, Gianluca; Rocchi, Mariano; Carbone, Lucia; Storlazzi, C. T.
Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer
(2014) in Nucleic acids research
Ruggero, Katia; Guffanti, Alessandro; Corradin, Alberto; Sharma, Varun Kumar; De Bellis, Gianluca; Corti, Giorgio; Grassi, Angela; Zanovello, Paola; Bronte, Vincenzo; Ciminale, Vincenzo; D'Agostino, Donna M.
Small noncoding RNAs in cells transformed by human T-cell leukemia virus type 1: A lole for a tRNA fragment as a primer for reverse transcriptase
(2014) in Journal of virology (Print)
Moiani, A.; Suerth, J.; Miccio, A.; Rizzi, E.; Severgnini, M.; De Bellis, G.; Schambach, A.; Mavilio, F.
Self-inactivating alpharetroviral vectors have a low genotoxic integration profile in human CD34(+) hematopoietic progenitor cells
(2013) in Human gene therapy
Fazio, Grazia; Storlazzi, Clelia Tiziana; Severgnini, Marco; Cazzaniga, Valeria; Impera, Luciana; Daniele, Giulia; Iacobucci, Ilaria; Galbiati, Marta; Leszl, Anna; Bungaro, Silvia; Cifola, Ingrid; De Bellis, Gianluca; Martinelli, Giovanni; Basso, Giuseppe; Biondi, Andrea; Cazzaniga, Giovanni
Novel Chimeric Transcripts Involving PAX5 in B-Cell Precursor ALL
(2013) in Blood
Centanni, Manuela; Turron, Silvia; Consolandi, Clarissa; Rampelli, Simone; Peano, Clelia; Severgnini, Marco; Biagi, Elena; Caredda, Giada; De Bellis, Gianluca; Brigidi, Patrizia; Candela, Marco
The Enterocyte-Associated Intestinal Microbiota of Breast-Fed Infants and Adults Responds Differently to a TNF-alpha-Mediated Pro-Inflammatory Stimulus
(2013) in PloS one
Proverbio, Maria Carla; Mangano, Eleonora; Gessi, Alessandra; Bordoni, Roberta; Spinelli, Roberta; Asselta, Rosanna; Valin, Paola Sogno; Di Candia, Stefania; Zamproni, Ilaria; Diceglie, Cecilia; Mora, Stefano; Caruso-Nicoletti, Manuela; Salvatoni, Alessandro; De Bellis, Gianluca; Battaglia, Cristina
Whole Genome SNP Genotyping and Exome Sequencing Reveal Novel Genetic Variants and Putative Causative Genes in Congenital Hyperinsulinism
(2013) in PloS one
Cifola, Ingrid and Pietrelli, Alessandro and Consolandi, Clarissa and Severgnini, Marco and Mangano, Eleonora and Russo, Vincenzo and De Bellis, Gianluca and Battaglia, Cristina
Comprehensive Genomic Characterization of Cutaneous Malignant Melanoma Cell Lines Derived from Metastatic Lesions by Whole-Exome Sequencing and SNP Array Profiling
(2013) in PloS one
Ghirotto S, Tassi F, Fumagalli E, Colonna V, Sandionigi A, Lari M, Vai S, Petiti E, Corti G, Rizzi E, De Bellis G, Caramelli D, Barbujani G.
Origins and Evolution of the Etruscans' mtDNA
(2013) in PloS one
Fondi, Marco and Rizzi, Ermanno and Emiliani, Giovanni and Orlandini, Valerio and Berna, Luisa and Papleo, Maria Cristiana and Perrin, Elena and Maida, Isabel and Corti, Giorgio and De Bellis, Gianluca and Baldi, Franco and Dijkshoorn, Lenie and Vaneechoutte, Mario and Fani, Renato
The genome sequence of the hydrocarbon-degrading Acinetobacter venetianus VE-C3
(2013) in Research in microbiology (Paris)
Pirona, R. and Vecchietti, A. and Lazzari, B. and Caprera, A. and Malinverni, R. and Consolandi, C. and Severgnini, M. and De Bellis, G. and Chietera, G. and Rossini, L. and Pozzi, C.
Expression profiling of genes involved in the formation of aroma in two peach genotypes
(2013) in Plant biology (Stuttg.)
Moiani, Arianna and Miccio, Annarita and Rizzi, Ermanno and Severgnini, Marco and Pellin, Danilo and Suerth, Julia Debora and Baum, Christopher and De Bellis, Gianluca and Mavilio, Fulvio
Deletion of the LTR Enhancer/Promoter Has No Impact on the Integration Profile of MLV Vectors in Human Hematopoietic Progenitors
(2013) in PloS one
Rumi, Elisa; Pietra, Daniela; Guglielmelli, Paola; Bordoni, Roberta; Casetti, Ilaria; Milanesi, Chiara; Sant'Antonio, Emanuela; Ferretti, Virginia; Pancrazzi, Alessandro; Rotunno, Giada; Severgnini, Marco; Pietrelli, Alessandro; Astori, Cesare; Fugazza, Elena; Pascutto, Cristiana; Boveri, Emanuela; Passamonti, Francesco; De Bellis, Gianluca; Vannucchi, Alessandro; Cazzola, Mario
Acquired copy-neutral loss of heterozygosity of chromosome 1p as a molecular event associated with marrow fibrosis in MPL-mutated myeloproliferative neoplasms
(2013) in Blood
Rizzi, Ermanno; Lari, Martina; Gigli, Elena; De Bellis, Gianluca; Caramelli, David
Ancient DNA studies: new perspectives on old samples (vol 44, pg 21, 2012)
(2013) in Genetics selection evolution (Print)
PEANO C, Pietrelli A, Consolandi C, Rossi E, Petiti L, Tagliabue L, Bellis G, Landini P.
An efficient rRNA removal method for RNA sequencing in GC-rich bacteria.
(2013) in Microbial informatics and experimentation
Alberto Magi, Lorenzo Tattini, Ingrid Cifola, Romina D'Aurizio, Matteo Benelli, Eleonora Mangano, Cristina Battaglia, Elena Bonora, Ants Kurg, Marco Seri, Pamela Magini, Betti Giusti, Giovanni Romeo, Tommaso Pippucci, Gianluca De Bellis, Rosanna Abbate,Gian Franco Gensini
EXCAVATOR: Detecting copy number variants from whole-exome sequencing data
(2013) in Genome biology (Online)
D'Angelo, Sara and Mignone, Flavio and Deantonio, Cecilia and Di Niro, Roberto and Bordoni, Roberta and Marzari, Roberto and De Bellis, Gianluca and Not, Tarcisio and Ferrara, Fortunato and Bradbury, Andrew and Santoro, Claudio and Sblattero, Daniele
Profiling celiac disease antibody repertoire
(2013) in Clinical immunology (Orlando, Fla., Print)
Annarita Miccio, Clelia Peano, Oriana Romano, Guidantonio Tagliazucchi, Luca Petiti, Ingrid Cifola, Ermanno Rizzi, Marco Severgnini, Silvio Bicciato, Gianluca De Bellis, Fulvio Mavilio.
Genome-wide analysis of promoter and enhancer usage in hematopoietic stem cell differentiation.
(2013) in Epigenetics & chromatin
Moiani, Arianna and Cavazza, Alessia and Miccio, Annarita and Suerth, Julia and Rizzi, Ermanno and Severgnini, Marco and Pellin, Danilo and De Bellis, Gianluca and Baum, Christopher and Mavilio, Fulvio
Self-inactivating and wild-type MLV vectors share the same integration profile in human CD34+hematopoietic progenitor cells but not in human epidermal keratinocytes
(2013) in Human gene therapy
Wang, Xiaoxia and Mitra, Nivedita and Secundino, Ismael and Banda, Kalyan and Cruz, Pedro and Padler-Karavani, Vered and Verhagen, Andrea and Reid, Chris and Lari, Martina and Rizzi, Ermanno and Balsamo, Carlotta and Corti, Giorgio and De Bellis, Gianluca and Longo, Laura and Beggs, William and Caramelli, David and Tishkoff, Sarah A. and Hayakawa, Toshiyuki and Green, Eric D. and Mullikin, James C. and Nizet, Victor and Bui, Jack and Varki, Ajit and NISC Comparative Sequencing
Specific inactivation of two immunomodulatory SIGLEC genes during human evolution
(2012) in Proceedings of the National Academy of Sciences of the United States of America
Rizzi, Ermanno and Lari, Martina and Gigli, Elena and De Bellis, Gianluca and Caramelli, David
Ancient DNA studies: new perspectives on old samples
(2012) in Genetics selection evolution (Print)
Tomato Genome Consortium
The tomato genome sequence provides insights into fleshy fruit evolution.
(2012) in Nature (Lond.)
Candela M, Rampelli S, Turroni S, Severgnini M, Consolandi C, De Bellis G, Masetti R, Ricci G, Pession A, Brigidi P
Unbalance of intestinal microbiota in atopic children
(2012) in BMC Microbiology (Online)
Peano C; Talà A; Corti G; Pasanisi D; Durante ; Mita G; Bocciato S; De Bellis G; Alitano P
Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over-producing strain
(2012) in Microbial cell factories
Sato, Shusei and Tabata, Satoshi and Hirakawa, Hideki and Asamizu, Erika and Shirasawa, Kenta and Isobe, Sachiko and Kaneko, Takakazu and Nakamura, Yasukazu and Shibata, Daisuke and Aoki, Koh and Egholm, Michael and Knight, James and Bogden, Robert and Li, Changbao and Shuang, Yang and Xu, Xun and Pan, Shengkai and Cheng, Shifeng and Liu, Xin and Ren, Yuanyuan and Wang, Jun and Albiero, Alessandro and Dal Pero, Francesca and Todesco, Sara and Van Eck, Joyce and Buels, Robert M. and Bombarely, Aureliano and Gosselin, Joseph R. and Huang, Minyun and Leto, Jonathan A. and Menda, Naama and Strickler, Susan and Mao, Linyong and Gao, Shan and Tecle, Isaak Y. and York, Thomas and Zheng, Yi and Vrebalov, Julia T. and Lee, JeMin and Zhong, Silin and Mueller, Lukas A. and Stiekema, Willem J. and Ribeca, Paolo and Alioto, Tyler and Yang, Wencai and Huang, Sanwen and Du, Yongchen and Zhang, Zhonghua and Gao, Jianchang and Guo, Yanmei and Wang, Xiaoxuan and Li, Ying and He, Jun and Li, Chuanyou and...
The tomato genome sequence provides insights into fleshy fruit evolution
(2012) in Nature (Lond.)
A. Cariani; A. Piano; C. Consolandi; M. Severgnini; B. Castiglioni; G. Caredda; M. Candela; P. Serratore; G. De Bellis; F. Tinti
Detection and characterization of pathogenic vibrios in shellfish by a Ligation Detection Reaction-Universal Array approach
(2012) in International journal of food microbiology
Olivieri C; Ermini L; Rizzi E; Corti G; Luciani S; Marota I; De Bellis G; Rollo F.
Phylogenetic Position of a Copper Age Sheep (Ovis aries) Mitochondrial DNA.
(2012) in PloS one
Turroni F, PEANO C, Pass DA, Foroni E, Severgnini M, Claesson MJ, Kerr C, Hourihane J, Murray D, Fuligni F, Gueimonde M, Margolles A, De Bellis G, O'Toole PW, van Sinderen D, Marchesi JR, Ventura M.
Diversity of bifidobacteria within the infant gut microbiota.
(2012) in PloS one
PEANO C., Talà A, Corti G, Pasanisi D, Durante M, Mita G, Bicciato S, De Bellis G and Alifano P
Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over-producing strain.
(2012) in Microbial cell factories
Moiani, Arianna and Miccio, Annarita and Suerth, Julia and Rizzi, Ermanno and Severgnini, Marco and Pellin, Danilo and Schambach, Axel and Baum, Christopher and De Bellis, Gianluca and Mavilio, Fulvio
Self-inactivating and wild-type MLV vectors have the same integration profile in human CD34(+) hematopoietic progenitor cells
(2012) in Human gene therapy
Consiglio Arianna, Rizzi Ermanno, De Caro Giorgio, Gisel Andreas, Grillo Giorgio, Licciulli Flavio, Pelucchi Paride, Tria Valeria, Rolland Reinbold, De Bellis Gianluca , Zucchi Ileana, Liuni Sabino, Tulipano Angelica
A BIOINFORMATIC APPROACH FOR NGS DATA TO ANALIZE AND VISUALIZE CHROMOSOMAL FUSION EVENTS IN HUMAN BREAST CANCER.
(2012) NGS12 WORKSHOP, TRENTO, June 2012
Consolandi C, Cremonesi P, Severgnini M, Bordoni R, PEANO C., De Bellis G, Castiglioni B
Array Platform for Food Safety and Quality
(2012) in OMICs Technologies: Tools for Food Science., 2012
Consolandi, Clarissa; Cremonesi, Paola; Severgnini, Marco; Bordoni, Roberta; Peano, Clelia; De Bellis, Gianluca; Castiglioni, Bianca
Array Platform for Food Safety and Quality
(2012) , 2012
Recchia, A.; Cattoglio, C.; Pellin, D.; Rizzi, E.; Corti, G.; Di Serio, C.; De Bellis, G.; Mavilio, F.
Defining the lentiviral integrome in human hematopoietic cells
(2011) in Human gene therapy
Ghisi, Margherita; Corradin, Alberto; Basso, Katia; Frasson, Chiara; Serafin, Valentina; Mukherjee, Subhamoy; Mussolin, Lara; Ruggero, Katia; Bonanno, Laura; Guffanti, Alessandro; De Bellis, Gianluca; Gerosa, Gino; Stellin, Giovanni; D'Agostino, Donna M.; Basso, Giuseppe; Bronte, Vincenzo; Indraccolo, Stefano; Amadori, Alberto; Zanovello, Paola
Modulation of microRNA expression in human T-cell development: targeting of NOTCH3 by miR-150
(2011) in Blood
Maciag, Anna; Peano, Clelia; Pietrelli, Alessandro; Egli, Thomas; De Bellis, Gianluca; Landini, Paolo
In vitro transcription profiling of the Sigma(S) subunit of bacterial RNA polymerase: re-definition of the Sigma(S) regulon and identification of Sigma(S)-specific promoter sequence elements
(2011) in Nucleic acids research
Camilli R; Bonnal RJ; Del Grosso M; Iacono M; Corti G; Rizzi E; Marchetti M; Mulas L; Iannelli F; Superti F; Oggioni MR; De Bellis G; Pantosti A.
Complete genome sequence of a serotype 11A, ST62 Streptococcus pneumoniae invasive isolate.
(2011) in BMC Microbiology (Online)
Lari M; Rizzi E; Mona S; Corti G; Catalano G; Chen K; Vernesi C; Larson G; Boscato P; De Bellis G; Cooper A; Caramelli D; Bertorelle G.
The Complete Mitochondrial Genome of an 11,450-year-old Aurochsen (Bos primigenius) from Central Italy
(2011) in BMC evolutionary biology (Online)
Pietra D, Brisci A, Rumi E, Boggi S, Elena C, Pietrelli A, Bordoni R, Ferrari M, Passamonti F, De Bellis G, Cremonesi L, Cazzola M.
Deep sequencing reveals double mutations in cis of MPL exon 10 in myeloproliferative neoplasms
(2011) in Haematologica (Roma)
Maciag A, Peano C, Pietrelli A, Egli T, De Bellis G, Landini P.
In vitro transcription profiling of the ?S subunit of bacterial RNA polymerase: re-definition of the ?S regulon and identification of ?S-specific promoter sequence elements
(2011) in Nucleic acids research
Ghisi M, Corradin A, Basso K, Frasson C, Serafin V, Mukherjee S, Mussolin L, Ruggero K, Bonanno L, Guffanti A, De Bellis G, Gerosa G, Stellin G, D'Agostino DM, Basso G, Bronte V, Indraccolo S, Amadori A, Zanovello P.
Modulation of microRNA expression in human T-cell development: targeting of NOTCH3 by miR-150
(2011) in Blood
Pietra, Daniela; Brisci, Angela; Rumi, Elisa; Boggi, Sabrina; Elena, Chiara; Pietrelli, Alessandro; Bordoni, Roberta; Ferrari, Maurizio; Passamonti, Francesco; De Bellis, Gianluca; Cremonesi, Laura; Cazzola, Mario
Deep sequencing reveals double mutations in cis of MPL exon 10 in myelloproliferative neoplasm's
(2011) in Haematologica (Roma)
Marco Severgnini, Paola Cremonesi; Clarissa Consolandi; Gianluca De Bellis; Bianca Castiglioni
Advances in DNA Microarray Technology for the Detection of Foodborne Pathogens
(2011) in Food and bioprocess technology (Print)
G. De Bellis A. Guffanti
Sequenze di microRNA individuate in popolazioni e sub-popolazioni ematiche
(2011)
Bonnal RJ, Severgnini M, Castaldi A, Bordoni R, Iacono M, Trimarco A, Torella A, Piluso G, Aurino S, Condorelli G, De Bellis* G, Nigro V
Reliable resequencing of the human dystrophin locus by universal long polymerase chain reaction and massive pyrosequencing
(2010) in Analytical biochemistry (Print)
Di Niro, R.; Sulic, A.; Mignone, F.; D'Angelo, S.; Bordoni, R.; Iacono, M.; Marzari, R.; Gaiotto, T.; Lavric, M.; Bradbury, A.; Biancone, L.; Zevin-Sonkin, D.; De Bellis, G.; Santoro, C.; Sblattero D.
Rapid interactome profiling by massive sequencing
(2010) in Nucleic acids research
Cattoglio C; Pellin D; Rizzi E; Maruggi G; Corti G; Miselli F; Sartori D; Guffanti A; Di Serio C; Ambrosi A; De Bellis G; Mavilio F
High-definition mapping of retroviral integration sites identifies active regulatory elements in human multipotent hematopoietic progenitors
(2010) in Blood
Martina Lari 1; Ermanno Rizzi 2; Lucio Milani 1; Giorgio Corti 2; Carlotta Balsamo 1; Stefania Vai 1; Giulio Catalano 1; Elena Pilli 1; Laura Longo 3,4; Silvana Condemi 5; Paolo Giunti 4; Catherine Hanni 6; Gianluca De Bellis 2; Ludovic Orlando 6; Guido Barbujani 7; David Caramelli 1
The Microcephalin Ancestral Allele in a Neanderthal Individual
(2010) in PloS one
Marco Candela; Clarissa Consolandi; Marco Severgnini; Elena Biagi; Bianca Castiglioni; Beatrice Vitali; Gianluca De Bellis, Patrizia Brigidi
High taxonomic level fingerprint of the human intestinal microbiota by Ligase Detection Reaction - Universal Array approach
(2010) in BMC Microbiology (Online)
Olivieri C, Ermini L, Rizzi E, Corti G, Bonnal R, Luciani S, Marota I, De Bellis G, Rollo F
Characterization of Nucleotide Misincorporation Patterns in the Iceman's Mitochondrial DNA
(2010) in PloS one
Di Niro, Roberto; Sulic, Ana Marija; Mignone, Flavio; D'Angelo, Sara; Bordoni, Roberta; Iacono, Michele; Marzari, Roberto; Gaiotto, Tiziano; Lavric, Miha; Bradbury, Andrew R.M.; Biancone, Luigi; Zevin-Sonkin, Dina; De Bellis, Gianluca; Santoro, Claudio; Sblattero, Daniele
Rapid interactome profiling by massive sequencing
(2010) in Nucleic acids research
Pelucchi P. Debellis GL Zucchi I
The transcriptional complexity of cancer: a breast cancer experience
(2010) 12th EUROPEAN WORKSHOP ON CYTOGENETICS AND MOLECULAR GENETICS OF SOLID TUMORS, NIJMEGEN HOLLAND, 3-6 June 2010
Elisabetta Carata, Clelia Peano, Salvatore M. Tredici, Francesco Ferrari, Adelfia Talà, Giorgio Corti, Silvio Bicciato, Gianluca De Bellis and Pietro Alifano
Phenotypes and gene expression profiles of Saccharopolyspora erythraea rifampicin-resistant (rif) mutants affected in erythromycin production
(2009) in Microbial cell factories
F. Miselli, C. Cattoglio, D. Pellin, A. Ambrosi, E. Rizzi, G. Maruggi, A. Recchia, G. De Bellis, F. Mavilio
High-resolution profiling of MLV integration in human CD34 cells reveals cell-specific transcriptional regulatory element
(2009) in Human gene therapy (Online)
C. Cattoglio, B. Felice, D. Cittaro, D. Pellin, A. Ambrosi, E. Rizzi, G. De Bellis, C. Bonini, G. Maruggi, F. Miselli, M. Schmidt, L. Luzi, A. Recchia, F. Mavilio
Cell-Specific Transcriptional Regulatory Domains Attract y-Retroviral Integration in the Human Genome
(2009) in Molecular therapy (Online)
Marco Severgnini; Paola Cremonesi; Clarissa Consolandi, Giada Caredda, Gianluca De Bellis; Bianca Castiglioni
ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design
(2009) in Nucleic acids research
Guffanti A; Iacono M; Pelucchi P; Kim N; Soldà G; Croft LJ; Taft RJ; Rizzi E; Askarian-Amiri M; Bonnal RJ; Callari M; Mignone F; Pesole G; Bertalot G; Bernardi LR; Albertini A; Lee C; Mattick JS; Zucchi I; De Bellis G.
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.
(2009) in BMC genomics
S. Sabella & G. Vecchio & P. P. Pompa & G. Maruccio & L. Sanarica & A. Della Torre & G. De Bellis & G. Caramenti & C. Consolandi & M. Severgnini & R. Cingolani & R. Rinaldi.
Disposable plastic microreactors for genomic analyses Biomed Microdevices
(2009) in Biomedical microdevices (Print)
Marco Candela, Elena Biagi, Samuele Dipalo , Marco Severgnini, Clarissa Consolandi, Bianca Castiglioni, Gianluca De Bellis
Development of a LDR-Universal array platform for the phylogenetic fingerprint of the Human Intestinal Microbiota
(2009) SIMGBM MEETING SPOLETO, Spoleto, June 11-13, 2009
Anne Rantala; Ermanno Rizzi; Bianca Castiglioni; Gianluca De Bellis; Karina Sivonen
Identification of hepatotoxin-producing cyanobacteria by DNA-chip
(2008) in Environmental microbiology (Print)
Iacono M, Villa L, Fortini D, Bordoni R, Imperi F, Bonnal RJ, Sicheritz-Ponten T, De Bellis G, Visca P, Cassone A, Carattoli A.
Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group.
(2008) in Antimicrobial agents and chemotherapy (Print)
Clarissa Consolandi; Marco Severgnini; Giada Caredda; Gianluca De Bellis
Anchoring of unmodified oligonucleotides on a chitosan-based array: applications to genotyping and gene expression
(2008) in Analytical biochemistry (Print)
Nelson Marmiroli; Elena Maestri; Mariolina Gullì; Alessio Malcevschi; Clelia Peano; Roberta Bordoni; Gianluca De Bellis
Methods for detection of GMOs in food and feed,
(2008) in Analytical & bioanalytical chemistry (Print)
Roberta Bordoni , Raoul Bonnal , Ermanno Rizzi , Paola Carrera , Sara Benedetti , Laura Cremonesi , Stefania Stenirri , Alessio Colombo , Cristina Montrasio , Sara Bonalumi , Alberto Albertini , Luigi Rossi Bernardi , Maurizio Ferrari and Gianluca de
Evaluation of human gene variant detection in amplicon pools by the GS-FLX parallel Pyrosequencer
(2008) in BMC genomics
Mannocci L, Zhang Y, Scheuermann J, Leimbacher M, De Bellis G, Rizzi E, Dumelin C, Melkko S, Neri D
High-throughput sequencing allows the identification of binding molecules isolated from DNA-encoded chemical libraries
(2008) in Proceedings of the National Academy of Sciences of the United States of America
Ermini L, Olivieri C, Rizzi E, Corti G, Bonnal R, Soares P, Luciani S, Marota I, De Bellis G, Richards MB, Rollo F
Complete mitochondrial genome sequence of the Tyrolean Iceman
(2008) in Current biology
Iacono, Michele; Villa, Laura; Fortini, Daniela; Bordoni, Roberta; Imperi, Francesco; Bonnal, Raoul J. P.; Sicheritz-Ponten, Thomas; De Bellis, Gianluca; Visca, Paolo; Cassone, Antonio; Carattoli, Alessandra
Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group
(2008) in Antimicrobial agents and chemotherapy (Print)
Clarissa Consolandi; Luisa Palmieri; Marco Severgnini; Elena Maestri; Nelson Marmiroli; Caterina Agrimonti; Luisa Baldoni; Paolo Donini; Gianluca De Bellis; Bianca Castiglioni
A procedure for olive oil traceability and authenticity: DNA extraction, multiplex PCR and LDR-universal array analysis
(2008) in European food research & technology (Print)
Clarissa Consolandi; Luisa Palmieri; Silvia Doveri, Elena Maestri; Nelson Marmiroli; Silvia Reale; David Lee; Luciana Baldoni; Nicola Tosti; Marco Severgnini; Gianluca De Bellis; Bianca Castiglioni
Olive variety identification by ligation detection reaction in a universal array format
(2007) in Journal of biotechnology
Trombetti GA, Bonnal RJ, Rizzi E, De Bellis G, Milanesi L.
Data handling strategies for high throughput pyrosequencers.
(2007) in BMC bioinformatics
Peano C, Bicciato S, Corti G, Ferrari F, Rizzi E, Bonnal RJ, Bordoni R, Albertini A, Bernardi LR, Donadio S, De Bellis G.
Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays.
(2007) in Microbial cell factories
Consolandi C(a), Severgnini M(a), Frosini A (a), Caramenti G (a), Fazio MD (b), Ferrara F (b), Zocco A (b), Fischetti A (b), Palmieri M (b), De Bellis G(a).
Polymerase chain reaction of 2-kb cyanobacterial gene and human anti-alpha(1)-chymotrypsin gene from genomic DNA on the In-Check single-use microfabricated silicon chip.
(2006) in Analytical biochemistry (Print)
Callegaro A, Spinelli R, Beltrame L, Bicciato S, Caristina L, Censuales S, De Bellis G, Battaglia C.
Algorithm for automatic genotype calling of single nucleotide polymorphisms using the full course of TaqMan real-time data
(2006) in Nucleic acids research
Severgnini M, Bicciato S, Mangano E, Scarlatti F, Mezzelani A, Mattioli M, Ghidoni R, Peano C, Bonnal R, Viti F, Milanesi L, De Bellis G, Battaglia C
Strategies for comparing gene expression profiles from different microarray platforms: Application to a case-control experiment
(2006) in Analytical biochemistry (Print)
Severgnini M; Pattini L; Consolandi C; Rizzi E; Battaglia C; De Bellis G; Cerutti S.
Application of the Taguchi method to the analysis of the deposition step in microarray production.
(2006) in IEEE transactions on nanobioscience
Peano C, Severgnini M, Cifola I, De Bellis G, Battaglia C.
Transcriptome amplification methods in gene expression profiling.
(2006) in Expert review of molecular diagnostics
Clarissa Consolandi; Marco Severgnini; Bianca Castiglioni; Roberta Bordoni; Andrea Frosini; Cristina Battaglia; Luigi Rossi Bernardi; Gianluca De Bellis
A Structured Chitosan-Based Platform for Biomolecule Attachment to Solid Surfaces: Application to DNA Microarray Preparation
(2006) in Bioconjugate chemistry
Trombetti G. A., Bonnal R. J. P., Rizzi E., De Bellis G., Milanesi L.
Data handling strategies for high throughput pyrosequencers.
(2006) BITS2006, Bologna
Stefania Chessa; Bianca Castiglioni; Gabriella Ceriotti; Gianluca De Bellis; Giulio Pagnacco
Microarray analysis applied to the study of milk protein loci in cattle
(2005) in Italian Journal of Animal Science (Testo stamp.)
Roberta Bordoni; Andrea Germini; Alessandra Mezzelani; Rosangela Marchelli; Gianluca De Bellis
A Microarray Platform for Parallel Detection of Five Transgenic Events in Foods: A Combined Polymerase Chain Reaction?Ligation Detection Reaction Universal Array Method
(2005) in Journal of agricultural and food chemistry
C. Peanoa, R. Bordoni, M. Gulli, A. Mezzelani, M.C. Samson, G. De Bellis, N. Marmiroli
Multiplex polymerase chain reaction and ligation detection reaction/universal array technology for the traceability of genetically modified organisms in foods
(2005) in Analytical biochemistry (Print)
Consolandi C.; Frosini A.; Pera C.; Ferrara G.B.; Bordoni R.; Rizzi E.; Castiglioni B.; Mezzelani A.; Rossi Bernardi L.; De Bellis G.; Battaglia C.
Polymorphism analysis within the HLA-A locus by universal oligonucleotide array
(2004) in Human mutation
Roberta Bordoni; Alessandra Mezzelani; Clarissa Consolandi; Andrea Frosini; Ermanno Rizzi; Bianca Castiglioni; Claudia Salati; Nelson Marmiroli; Rosangela Marchelli; Luigi Rossi Bernardi; Cristina Battaglia; Gianluca De Bellis
Detection and quantitation of genetically modified maize (Bt-176 transgenic maize) by applying ligation detection reaction and universal array technology.
(2004) in Journal of agricultural and food chemistry
Bianca Castiglioni; Ermanno Rizzi; Andrea Frosini; Kaarina Sivonen; Pirjo Rajaniemi; Anne Rantala; Maria Angela Mugnai; Stefano Ventura; Annick Wilmotte; Christophe Boutte; Stana Grubisic; Pierre Balthasart; Clarissa Consolandi; Roberta Bordoni; Alessandra Mezzelani; Cristina Battaglia; De Gianluca Bellis
Development of a universal microarray based on the ligation detection reaction and 16S rRNA gene polymorphism to target diversity of cyanobacteria
(2004) in Applied and environmental microbiology (Print)
Andrea Germini; Alessandra Mezzelani; Francesca Lesignoli; Roberto Corradini; Rosangela Marchelli; Roberta Bordoni; Clarissa Consolandi; Gianluca De Bellis
Detection of Genetically Modified Soybean Using Peptide Nucleic Acids (PNAs) and Microarray Technology
(2004) in Journal of agricultural and food chemistry
SIVONEN, K; RANTALA, A; Rouhianen, L; Fewer, D; Rajaniemi, P; Wilmotte, A; Boutte, C; Grubisic, S; Balthasart, P; De Bellis, G; Rizzi, E; Frosini, A; Castiglioni, B; Ventura, S; Mugnai, M
Method for detecting toxic and non toxic cyanobacteria
(2004)
R. Marchelli, R. Corradini, A. Germini, G. De Bellis, A. Mezzelani, R. Bordoni.
Use of peptide nucleic acids (PNAs) and microarrays for the detection of DNA sequences in food matrices
(2004)
Clarissa Consolandi, Roberta Bordoni and Gianluca De Bellis
Investigation of human polymorphisms by Ligation Detection Reaction and Universal Array
(2003) ESF workshop on SNPs analysis, tools and applications, CNIO auditorium, Madrid, Spagna, 28-29 Novembre 2003
Zambenedetti P., De Bellis G.L., Biunno I., Musicco M., Zatta P.
Transferrin C2 variant does confer a risk for Alzheimers disease in caucasian.
(2003) in Journal of Alzheimer's disease
De Bellis G.; Caramenti G.; Ilie M.; Cianci E.; Foglietti V.
Application of microtechnology in biotechnology. Microarray analytical systems-an overview.
(2003) in Journal of Optoelectronics and Advanced Materials (Print)
Consolandi C., Busti E., Pera C., Delfino L., Ferrara G.B., Bordoni R., Castiglioni B., Rossi Bernardi L., Battaglia C., De Bellis G.
Detection of HLA polymorphisms by ligase detection reaction and a universal array format: a pilot study for low resolution genotyping
(2003) in Human immunology
Bordoni R.; Castiglioni B.; Mezzelani A.; Rizzi E.; Frosini A.; Consolandi C.; Rossi Bernardi L.; Battaglia C.; De Bellis G.
Apolipoprotein E and transferrin genotyping by ligation detection reaction and universal array
(2003) in Clinical chemistry (Baltim. Md.)
Bicciato, Mangano, Frosini, Luchini, De Bellis, Battaglia
Strategies and tools for upgrading the information content of regulated genes lists from microarray experiments
(2003) in Minerva biotecnologica (Testo stamp.)
Bordoni, R; Castiglioni, B; Mezzelani, A; Rizzi, E; Frosini, A; Consolandi, C; Bernardi, LR; Battaglia, C; De Bellis, G
Apolipoprotein E and transferrin genotyping by ligation detection reaction and universal array
(2003) in Clinical chemistry (Baltim. Md.)
Consolandi, C; Busti, E; Pera, C; Delfino, L; Ferrara, GB; Bordoni, R; Castiglioni, B; Bernardi, LR; Battaglia, C; De Bellis, G
Detection of HLA polymorphisms by ligase detection reaction and a universal array format: A pilot study for low resolution genotyping
(2003) in Human immunology
Bicciato, S; Mangano, E; Frosini, A; Luchini, A; De Bellis, G; Battaglia, C
Strategies and tools for upgrading the information content of regulated gene lists from microarray experiments
(2003) in Minerva biotecnologica (Testo stamp.)
Bordoni, R; Consolandi, C; Castiglioni, B; Busti, E; Bernardi, LR; Battaglia, C; De Bellis, G
Investigation of the multiple anchors approach in oligonucleotide microarray preparation using linear and stem-loop structured probes
(2002) in Nucleic acids research
Busti, Elena; Bordoni, Roberta; Castiglioni, Bianca; Monciardini, Paolo; Sosio, Margherita; Donadio, Stefano; Consolandi, Clarissa; Bernardi, Luigi Rossi; Battaglia, Cristina; De Bellis, Gianluca
Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction)
(2002) in BMC Microbiology (Online)
Busti, Elena; Bordoni, Roberta; Castiglioni, Bianca; Monciardini, Paolo; Sosio, Margherita; Donadio, Stefano; Consolandi, Clarissa; Bernardi, Luigi Rossi; Battaglia, Cristina; De Bellis, Gianluca
Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction)
(2002) in BMC Microbiology (Online)
Consolandi, C; Castiglioni, B; Bordoni, R; Busti, E; Battaglia, C; Bernardi, LR; De Bellis, G
Two efficient polymeric chemical platforms for oligonucleotide microarray preparation
(2002) in Nucleosides, nucleotides & nucleic acids
Mezzelani A., Bordoni R., Consolandi C., Rossi Bernardi L., Frosini A., Castiglioni B., Rizzi E., Marchelli R., Marmiroli N., Corradini R., Germini A., Battaglia C., De Bellis G.
Ligation detection reaction and universal array for detection and identification of genetically modified organisms (GMOs)
(2002) in Minerva biotecnologica (Testo stamp.)
Frosini A., Casati P., Bianco P. A., Bordoni R., Consolandi C., Castiglioni B., Mezzelani A., Rizzi E., Battaglia C., Belli G., Rossi Bernardi L., De Bellis G.
Ligase detection reaction and universal array as a tool to detect grapevine infecting phytoplasmas
(2002) in Minerva biotecnologica (Testo stamp.)
De Bellis G., Castiglioni B., Bordoni R., Mezzelani A., Rizzi E., Frosini A., Busti E., Consolandi C., Rossi Bernardi L., Battaglia C.
Ligase detection reaction (LDR) and universal array (Zip Code): application to DNA genotyping
(2002) in Minerva biotecnologica (Testo stamp.)
Bordoni R., Consolandi C., Castiglioni B., Busti E., Bernardi L.R., Battaglia C., De Bellis G.
Investigation of the multiple anchors approach in oligonucleotide microarray preparation using linear and stem-loop structured probes.
(2002) in Nucleic acids research
Consolandi C., Castiglioni B., Bordoni R., Busti E., Battaglia C., Rossi Bernardi L., De Bellis G.
Two efficient polymeric platforms for oligonucleotide microarray preparation.
(2002) in Nucleosides, nucleotides & nucleic acids
Consolandi C., Bordoni R., Castiglioni B., Frosini A., Mezzelani A., Rizzi E., Battaglia C., Pera C., Ferrara G.B., Zatta P., Zambenedetti P., Rossi Bernardi L., De Bellis G.
Investigation of a subset of human polymorphisms by ligase detection reaction and universal array
(2002) in Minerva biotecnologica (Testo stamp.)
Biunno I., Castiglioni B., Rogozin I.B., DeBellis G., Malferrari G., Cattaneo M.
Cross-species conservation of SEL1L, a human pancreas-specific expressing gene.
(2002) in Omics (Larchmt. N.Y. Online)
Busti E, Bordoni R., Castiglioni B., Monciardini P., Sosio M., Donadio S., Consolandi C., Rossi Bernardi L., Battaglia C., De Bellis G.,
Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction).
(2002) in BMC Microbiology (Online)
Castiglioni B., Rizzi E., Frosini A., Mugnai M.A., Ventura S., Sivonen K., Rajaniemi P., Rantala A., Wilmotte A., Boutte C., Consolandi C., Bordoni R., Mezzelani A., Busti E., Rossi Bernardi L., Battaglia C., De Bellis G.
Application of an universal DNA microarray to cyanobacterial diversity assessment
(2002) in Minerva biotecnologica (Testo stamp.)
Bianca Castiglioni, Ermanno Rizzi, Andrea Frosini, Maria Mugnai, Stefano Ventura, Kaarina Sivonen, Rajaniemi Pirjo, Rantala Anne, Annick Wilmotte, Christophe Boutte, Clarissa Consolandi, Roberta Bordoni, Alessandra Mezzelani, Elena Busti, Luigi Rossi Bernardi, Cristina Battaglia and Gianluca De Bellis
Application of a Universal DNA Microarray to Cyanobacterial diversity assessment
(2002) in Minerva biotecnologica (Testo stamp.)
De Bellis G, Castiglioni B, Consolandi C, Bordoni R, Battaglia C, Rossi Bernardi L
Structured chemical platform for biomolecule attachment to solid surfaces
(2002)
Consolandi, C., Castiglioni, B., Bordoni, R., Busti, E., Battaglia, C., De Bellis, G
Development of oligonucleotide arrays to detect mutations and polymorphisms
(2001) in Minerva biotecnologica (Testo stamp.)
G. De Bellis,G. Caramenti, M. Ilie, E Cianci, V. Foglietti
Microelectrodes organized in a array format for biomolecular investigations
(2001) in Minerva biotecnologica (Testo stamp.)
Grimaldi LM, Casadei VM, Ferri C, Veglia F, Licastro F, Annoni G, Biunno I, De Bellis G, Sorbi S, Mariani C, Canal N, Griffin WS, Franceschi M
Association of early-onset Alzheimer's disease with an interleukin-1alpha gene polymorphism
(2000) in Annals of neurology (Online)
Gianluca De Bellis, Giuliana Salani, Cristina Battaglia, Piergiorgio Pietta, Enrico Rosti, Pierluigi Mauri
Electrospray mass spectrometry of synthetic oligonucleotides using 2-propanol and spermidine
(2000) in Rapid communications in mass spectrometry (Online)
Battaglia C, Salani G, Consolandi C, Bernardi LR, De Bellis G.
Analysis of DNA microarrays by non-destructive fluorescent staining using SYBR green II.
(2000) in Biotechniques (Online)
Battaglia C, Salani G, Consolandi C, Bernardi LR, De Bellis G
Analysis of DNA microarrays by non-destructive fluorescent staining using SYBR green II.
(2000) in BioTechniques
G. Valentini, C. D'Andrea, D. Comelli, A. Pifferi, P. Taroni, A. Torricelli, R. Cubeddu, C. Battaglia, C. Consolandi, G. Salani, L. Rossi-Bernardi, G. De Bellis,
Time-resolved DNA-microarray reading by an intensified CCD for ultimate sensitivity
(2000) in Optics letters
Gianluca De Bellis, Pasquale De Blasio and Clarissa Consolandi
PROGETTO PNR- Tema 9 "Strumentazione per le Biotecnologie Avanzate"- linea 1.3.2.2.
(2000)
Maria Flora Mangano, Cristina Battaglia, Giuliana Salani, Luigi Rossi Bernardi and Gianluca De Bellis
OLIGONUCLEOTIDES QUALITY CONTROL ANALYSIS IN FREE SOLUTION BY CAPILLARY ELECTROPHORESIS AT ACIDIC pH.
(1999) in Nucleosides & nucleotides
Maria Flora Mangano, Cristina Battaglia, Giuliana Salani, Luigi Rossi Bernardi and Gianluca De Bellis*
Composition dependent separation of oligonucleotides by capillary electrophoresis in acidic buffers with application to the quality control of synthetic oligonucleotides.
(1999) in Journal of chromatography (Print)
G De Bellis*, C Battaglia, G. Salani, L Rossi Bernardi
Microarray technology in molecular diagnosis and gene expression studies
(1999) in Minerva biotecnologica (Testo stamp.)
Pietta PG, Mangano MF, Battaglia C, Salani G, Bernardi LR, De Bellis G.
Application of capillary electrophoresis at low pH to oligonucleotides quality control.
(1999) in Journal of chromatography (Print)
Biunno I, Rogozin IB, Appierto V, Milanesi L, Mostardini M, Mumm S, Pergolizzi R, Zucchi I, De Bellis G. DNA Seq.
Sequence and gene content in 35 kb genomic clone mapping in the human Xq27.1 region.
(1997) in DNA sequence (Print)
de Bellis G, Salani G, Panigone S, Betti F, Invernizzi L, Luzzana M.
Apolipoprotein E genotyping by capillary electrophoretic analysis of restriction fragments.
(1997) in Clinical chemistry (Baltim. Md.)
G. De Bellis*, G. Salani,
Oligonucleotide analysis by capillary zone electrophoresis at low pH
(1997) in Analytica chimica acta (Print)
M. Mostardini, V. Appierto, R. Pergolizzi, I. Zucchi, S. Mumm, G. De Bellis, L. Milanesi, I. Rogozin, I. Biunno,
Identification of a U7snRNAhomologue mapping to the human Xq27.1 region between the DXS1232 and DXS119loci
(1997) in Gene (Amst.)
De Bellis G., Manoni M., Pergolizzi R., Redolfi M.E., Luzzana M.
A more stringent choice of primers can improve the performance of fluorescent automated DNA sequencers
(1997) Eaton Publishing/BioTechniques Books, Natick (Stati Uniti d'America) in The PCR technique: DNA Sequencing II, 1997
R. Pergolizzi, V. Appierto, A. Bosetti, G. De Bellis, E. Rovida, I. Biunno
Cloning of a gene encoding a Dnase I-like endonuclease in the human Xq28 region
(1996) in Gene (Amst.)
Debernardi S, De Bellis G, Mosca A, Paleari R, Luzzana M.
Characterization of Hb Camperdown [beta 104(G6)Arg-->Ser] by capillary electrophoresis and automated solid phase DNA sequencing.
(1996) in Hemoglobin
Cappellini MD, Martinez di Montemuros F, De Bellis G, Debernardi S, Dotti C, Fiorelli G.
Multiple G6PD mutations are associated with a clinical and biochemical phenotype similar to that of G6PD Mediterranean.
(1996) in Blood
De Bellis G, Invernizzi L, Debernardi S, Pergolizzi R, Luzzana M.
Anion-exchange HPLC analysis of biotinylated oligonucleotides.
(1995) in BioTechniques
De Bellis G, Pergolizzi R, Debernardi S, Invernizzi L, Luzzana M.
Fluorescence-based automated DNA sequencing by limited primer labeling.
(1995) in BioTechniques
Martinez di Montemuros F, Cappellini MD, Dotti C, Tavazzi D, De Bellis G, Debernardi S, Fiorelli G
Molecular characterisation of an Italian G6PD variant responsible for chronic non-spherocytic haemolytic anaemia.
(1994) in Clinical genetics
Paleari R, Mosca A, Maccaronio A, De Bellis G, Debernardi S, Lang F, Luzi L.
Hb Agenogi [beta 90(F6)Glu-->Lys] identified by DNA analysis.
(1994) in Hemoglobin
De Bellis G, Consani I, Caramenti G, Pergolizzi R, Debernardi S, Invernizzi L, Luzzana M.
Mixed-mode fluorescent DNA sequencing.
(1994) in BioTechniques
Pergolizzi R. Appierto V. Sacchi C. Mostardini M., Manca A., Korn B., Pouska A., De Bellis G., Biunno I
Identification of novel putative genes in the human Xq27-28 region
(1994) in Cytogenetics and cell genetics
Tripputi P., Bacciocchi G.,Accolla R.S., Mantero G., De Bellis G., Manoni M., Cassani G., G. Corneo,
Detection of human chromosomes in somatic cell hybrids by PCR analysis,
(1993) in Cytogenetics and cell genetics
Paleari R., A. Mosca, A. Maccaronio, F. Rubino, L. Zecca, G. De Bellis, S. Debernardi, D. Cappellini and G. Fiorelli
Hb Abruzzo beta 143 (H21) His>Arg. A high oxygen affinity variant identified by mass spectrometry and DNA analysis
(1993) in Hemoglobin
De Bellis G.*, Manoni M., Pergolizzi R., Redolfi M.E., Luzzana M.
A more stringent choice of primers can improve the performance of fluorescent automated DNA sequencers,
(1992) in BioTechniques
Manoni M., Pergolizzi R., Luzzana M., De Bellis G
Dideoxy linear polimerase chain reaction on a commercial fluorescent automated DNA sequencer
(1992) in BioTechniques
De Bellis G.*, Consani I.R., Manoni M., Pergolizzi R., Luzzana M.
Fluorescent automated sequencers: a file exchange program.
(1992) in Computer applications in the biosciences (Print)
Manoni M., Pergolizzi R., Luzzana M., De Bellis G.
Dideoxy linear polimerase chain reaction on a commercial fluorescent automated DNA sequencer
(1992) Eaton Publishing/BioTechniques Books, Natick (Stati Uniti d'America) in The PCR technique : DNA sequencing, 1992
Manoni M., Tribioli C., B. Lazzari, G. De Bellis, M. Patrosso, R. Pergolizzi, M. Pellegrini, E. Maestrini, S. Rivella, P. Vezzoni, D. Toniolo
The nucleotide sequence of a CpG island demonstrates the presence of the first exon of the gene encoding the human lysosomal membrane protein h-lamp2, and assigns the gene to Xq24
(1991) in Genomics (S. Diego Calif.)
De Bellis G.*, M. Manoni, R. Pergolizzi, P. Vezzoni, M. Luzzana
Primer design in fluorescent automated DNA sequencing
(1990) in Nucleic acids research
Benfenati E., De Bellis G., Chen S., Fanelli R., Tacconi M.T., Kirschner G., Pege G.
A fast atom bombardment-mass spectrometric method to quantitate lyso-phosphatidylserine in rat brain
(1989) in Journal of lipid research (Print)
Benfenati E., Farina P., Colombo T., De Bellis G., Capodiferro M.V., D'Incalci M
Metabolism and pharmacokinetics of p-(3,3-dimethyl-1-triazeno) benzoic acid in M5076 sarcoma bearing mice
(1989) in Cancer chemotherapy and pharmacology
Benfenati E., D. Macconi, M. Noris, G. Icardi, L. Bettazzoli, G. De Bellis, M. Gavinelli, S. Rotondo, G. Remuzzi
Development of a mass spectrometric method to quantitate platelet activating factor in mouse urine.
(1989) in Journal of lipid research (Print)