Le informazioni pubblicate in questa pagina sono gestite in completa autonomia da VITO FLAVIO LICCIULLI il/la quale se ne assume ogni responsabilità
Liguori M1, Nuzziello N1,2, Licciulli F1, Consiglio A1, Simone M2, Viterbo RG2, Creanza TM3, Ancona N3, Tortorella C2,4, Margari L2, Grillo G1, Giordano P5, Liuni S1, Trojano M2.
Combined microRNA and mRNA expression analysis in pediatric multiple sclerosis: an integrated approach to uncover novel pathogenic mechanisms of the disease.
(2018) in Human molecular genetics (Print)
Liguori, Maria; Nuzziello, Nicoletta; Licciulli, Flavio; Consiglio, Arianna; Simone, Marta; Gemma Viterbo, Rosa; Creanza, Teresa Maria; Ancona, Nicola; Tortorella, Carla; Margari, Lucia; Grillo, Giorgio; Giordano, Paola; Liuni, Sabino; Trojano, Maria
Combined microRNAs and mRNAs expression analysis in Pediatric Multiple Sclerosis: an integrated approach to uncover novel pathogenic mechanisms of the disease.
(2017) in Human molecular genetics online
Nuzziello, Nicoletta; Blonda, Maria; Licciulli, Flavio; Liuni, Sabino; Amoruso, Antonella; Valletti, Alessio; Consiglio, Arianna; Avolio, Carlo; Liguori, Maria
Molecular Characterization of Peripheral Extracellular Vesicles in Clinically Isolated Syndrome: Preliminary Suggestions from a Pilot Study.
(2017) in Medical sciences
Santamaria, Monica; Fosso, Bruno; Licciulli, Flavio; Balech, Bachir; Larini, Ilaria; Grillo, Giorgio; De Caro, Giorgio; Liuni, Sabino; Pesole, Graziano
ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences.
(2017) in Nucleic acids research (Online)
Puccio, Simone; Grillo, Giorgio; Licciulli, Flavio; Severgnini, Marco; Liuni, Sabino; Bicciato, Silvio; De Bellis, Gianluca; Ferrari, Francesco; Peano, Clelia
WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes.
(2017) in Nucleic acids research
Liguori, M.; Nuzziello, N.; Simone, M.; Licciulli, V. F.; Viterbo, R. G.; Ancona, N.; Consiglio, A.; Creanza, T.; De Caro, G.; Liuni, S.; Margari, L.; Trojano, M.
Molecular signatures associated with cognitive dysfunctions in pediatric multiple sclerosis
(2016) Congresso annuale dello European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), Londra, 14-17/09/2016
Vincenzo Bonnici1*, Giorgio De Caro2*, Sabino Liuni2, Domenica D'Elia2, Nicola Bombieri1, Rosalba Giugno1*, Flavio Licciulli2*
Integrating bioinformatics resources for modelling Human non-coding RNA networks
(2016) Joint CHARME-EMBnet-NETTAB 2016 Workshop Reproducibility, standards and SOP in Bioinformatics, CNR, Piazzale Aldo Moro, 7, Roma, 25/10/2016, 26/10/2016
Giorgio De Caro 1, Arianna Consiglio 1, Domenica D'Elia 1?, Andreas Gisel 1,2, Giorgio Grillo 1, Sabino Liuni 1, Angelica Tulipano 1, Flavio Licciulli 1
The NonCode aReNA DB: a non-redundant and integrated collection of non- codingRNAs
(2015) in EMBnet journal
Giorgio De Caro1, Arianna Consiglio1, Domenica D'Elia1, Andreas Gisel1, Giorgio Grillo1, Sabino Liuni1, Angelica Tulipano1 and Flavio Licciulli1
NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs
(2015) BITS 2015 Twelfth Annual Meeting of the Bioinformatics Italian Society, Milan, 3-5 Giugno 2015
Cillo F., Tulipano A., Carluccio A.V., De Caro G., Licciulli F., D'elia D., Stavolone L., Gisel A.
Plant responses to two diverse viruses involve different DNA methylation profiles
(2015) Convegno congiunto SIBV-SIGA "Feeding the planet: plant science and breeding for the future of agriculture", Milano, Italy, 8-11 Settembre 2015
Giorgio De Caro 1, Arianna Consiglio 1, Domenica D'Elia 1 ?, Andreas Gisel 1,2, Giorgio Grillo 1, Sabino Liuni 1, Angelica Tulipano 1, Flavio Licciulli 1
The NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs
(2015) COST Conference "Next Generation Sequencing: a look into the future", Bratislava, Slovakia, 16-17 March 2015
Giorgio De Caro1, Arianna Consiglio1, Domenica D'Elia1, Andreas Gisel1, Giorgio Grillo1, Sabino Liuni1, Angelica Tulipano1 and Flavio Licciulli1
NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs
(2015) NETTAB 2015 & Integrative Bioinformatics 2015 Joint Symposium, Bari, 14-16 October 2015
Angelica Tulipano1, Fabrizio Cillo2, Anna Vittoria Carluccio2, Giorgio De Caro1, Flavio Licciulli1, Domenica D'Elia, Livia Stavolone1,3, Andreas Gisel1,3
DNA and RNA viruses infection in plant: two different ways to dynamically change the host's epigenetic profile
(2015) NETTAB 2015 & Integrative Bioinformatics 2015 Joint Symposium, Bari, 14-16 October 2015
Angelica Tulipano1, Anna Vittoria Carluccio2, Giorgio De Caro1, Domenica D'Elia1, Fabrizio Cillo2, Flavio Liciulli1, Livia Stavolone2, 3, Andreas Gisel1, 3
Comparison of co-regulation of DNA methylation and smallRNA expression between Arabidopsis infected with RNA and DNA virus
(2015) Keystone Symposia "DNA Methylation", Keystone Resort, Keystone, Colorado, USA, March 29--April 3, 2015
Angelica Tulipano1, Anna Vittoria Carluccio2, Giorgio De Caro1, Domenica D'Elia1, Fabrizio Cillo2, Flavio Liciulli1, Livia Stavolone2, 3, Andreas Gisel1, 3,
Comparison of co-regulation of DNA methylation and smallRNA expression between Arabidopsis infected with RNA and DNA virus
(2015) KEYSTONE SYMPOSIA ON MOLECULAR AND CELLULAR BIOLOGY - DNA Methylation (Z1) - Joint Meeting: Epigenomics (Z2), Keystone Resort o Keystone, Colorado USA, 29-31 March-1-2 April 2015
Flavio Licciulli
nc-aReNA: an integrated web-based platform for small non-coding RNAs data analysis
(2015) FROM NUCLEIC ACID TO PERSONALIZED MEDICINE: INNOVATIVE APPROACHES TO EARLY DIAGNOSIS AND THERAPY OF DISEASES AT HIGH SOCIAL IMPACT, Bari, 16 Novembre 2015
De Caro G1*, Tulipano A1*, Consiglio A1, D'Elia D1, Grillo G1, Marinaro M2, Liuni S1, Licciulli F1 and Gisel A1
*Equal contributors
nc-aReNA: an integrated bioinformatics platform for non-coding RNA-seq data classification and annotation
De Caro G1*, Tulipano A1*, Consiglio A1, D'Elia D1, Grillo G1, Marinaro M2, Liuni S1, Licciulli F1 and Gisel A1
(2014) NGS and non-coding RNA data analysis workshop II (2014), Plovdiv, Bulgaria, 15-16 May 2014
Claudia Calabrese1+, Marina Mangiulli2+, Caterina Manzari2, Anna Maria Paluscio3, Mariano Francesco Caratozzolo3, Flaviana Marzano3, Ivana Kurelac1, Anna Maria D'Erchia2, Domenica D'Elia3, Flavio Licciulli3, Sabino Liuni3, Ernesto Picardi2, Marcella Attimonelli2, Giuseppe Gasparre1, Anna Maria Porcelli4, Graziano Pesole25, Elisabetta Sbisà3 and Apollonia Tullo3*
A platform independent RNA-Seq protocol for the detection of transcriptome complexity
(2013) in BMC genomics
A. Logrieco, A. Susca, F. Pizzi, A. Stella, G. G.Vendramin, D. Catalano, F. Licciulli.
BIOGENRES
(2013)
Tulipano A, Consiglio A, D'Elia D, Grillo G, Liuni S, Licciulli F and Gisel A
Platform for functional ncRNA analysis of NGS data
(2013) Interomics Meeting, Roma, 06/03/2013, 06/04/2013
Claudia Calabrese1,§, Marina Mangiulli2,§, Caterina Manzari2, Anna Maria Paluscio3, Mariano
Francesco Caratozzolo3, Flaviana Marzano3, Ivana Kurelac1, Anna Maria D'Erchia2, Domenica
D'Elia3, Flavio Licciulli3, Sabino Liuni3, Ernesto Picardi2, Marcella Attimonelli2, Giuseppe Gasparre1,
Anna Maria Porcelli4, Graziano Pesole2,5, Elisabetta Sbisà3 and Apollonia Tullo3
A NOVEL GENERAL-PURPOSE RNA-SEQ PROTOCOL OPTIMIZING THE DETECTION OF TRANSCRIPTOME EXPRESSION COMPLEXITY
Claudia Calabrese1,§, Marina Mangiulli2,§, Caterina Manzari2, Anna Maria Paluscio3, Mariano
Francesco Caratozzolo3, Flaviana Marzano3, Ivana Kurelac1, Anna Maria D'Erchia2, Domenica
D'Elia3, Flavio Licciulli3, Sabino Liuni3, Ernesto Picardi2, Marcella Attimonelli2, Giuseppe Gasparre1,
(2012) Next Generation Sequencing & Epigenomics 4° Bari Workshop, Bari, 05/12/2012, 07/12/2012
B. Fosso1, M. Santamaria2, A. Consiglio3, G. De Caro3, G. Grillo3, F. Licciuli3, S. Liuni3, M. Marzano2, G. Pesole1
ITSoneDB: a specialized ITS1 database for amplicon-based metagenomic characterization of environmental fungal communities
(2012) in EMBnet journal
Monica Santamaria 1, Bruno Fosso 2, Arianna Consiglio 3, Giorgio De Caro 3, Giorgio Grillo 3, Flavio Licciulli 3, Sabino Liuni 3, Marinella Marzano 1, Daniel Alonso-Alemany 4, Gabriel Valiente 4 and Graziano Pesole 1,2
Reference databases for taxonomic assignment in metagenomics
(2012) in Briefings in bioinformatics
Arianna Consiglio 1, Massimo Carella 2, Giorgio De Caro 1, Gianfranco Delle Foglie 1, Candida Giovannelli 3, Giorgio Grillo 1, Massimo Ianigro 3, Flavio Licciulli 1, Orazio Palumbo 2, Ada Piepoli 4, Elena Ranieri 5, Sabino Liuni 1
BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments
(2012) in BMC bioinformatics
Paolo Pannarale 3; Domenico Catalano 2; Giorgio De Caro 1; Giorgio Grillo 1; Pietro Leo 3; Graziano Pappadà 4;Francesco Rubino 3; Gaetano Scioscia 3; Flavio Licciulli 1;
GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database
(2012) in BMC bioinformatics
Monica Santamaria 1, Bruno Fosso 2, Arianna Consiglio 3, Giorgio De Caro 3, Giorgio Grillo 3, Flavio Licciulli 3, Sabino Liuni 3, Marinella Marzano 1, Daniel Alonso-Alemany 4, Gabriel Valiente 4 and Graziano Pesole 1,2
ITSoneDB
(2012)
Consiglio Arianna, Rizzi Ermanno, De Caro Giorgio, Gisel Andreas, Grillo Giorgio, Licciulli Flavio, Pelucchi Paride, Tria Valeria, Rolland Reinbold, De Bellis Gianluca , Zucchi Ileana, Liuni Sabino, Tulipano Angelica
A BIOINFORMATIC APPROACH FOR NGS DATA TO ANALIZE AND VISUALIZE CHROMOSOMAL FUSION EVENTS IN HUMAN BREAST CANCER.
(2012) NGS12 WORKSHOP, TRENTO, June 2012
Pier L. Martelli1, Mattia D'Antonio2, Paola Bonizzoni3, Tiziana Castrignano` 2, Anna M. D'Erchia4, Paolo D'Onorio De Meo2, Piero Fariselli1, Michele Finelli5, Flavio Licciulli6, Marina Mangiulli4, Flavio Mignone7, Giulio Pavesi8, Ernesto Picardi3, Raffaella Rizzi3, Ivan Rossi5, Alessio Valletti4, Andrea Zauli5, Federico Zambelli8, Rita Casadio1,* and Graziano Pesole4,9
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing
(2011) in Nucleic acids research (Online)
Consiglio, Arianna; Grillo, Giorgio; Licciulli, Flavio; Ceci, Luigi R.; Liuni, Sabino; Losito, Nicola; Volpicella, Mariateresa; Gallerani, Raffaele; De Leo, Francesca
PlantPIs - An Interactive Web Resource on Plant Protease Inhibitors
(2011) in Current protein and peptide science (Print)
Consiglio A 1, Grillo G 1, Licciulli F 1, Ceci LR 2, Liuni S 1, Losito N 1, Volpicella M 2, Gallerani R 3, De Leo F 2.
PlantPIsDB
(2011)
Domenica D'Elia1, Marina Mangiulli2, Anna Maria Paluscio1, Caterina Manzari1, Mariano Francesco Caratozzolo1, Flaviana Marzano3, Anna Maria D'Erchia2, Flavio Mignone4, Flavio Licciulli1, Giorgio Grillo1, Sabino Liuni1, Graziano Pesole2,5, Elisabetta Sbisà1, Apollonia Tullo1
Identification of new p53 regulatory networks through NGS data analysis
(2011) Next Generation Sequencing Workshop, Third Edition, Bari, 12/10/2011, 14/10/2011
Pannarale P, Scioscia G, Rubino F, Leo P, Pappadà G, DElia D, Grillo G, Vicario S, De Caro G, Gisel A, Mulè G, Susca 4, Catalano D, Licciulli F
Social Database for Biodiversity
(2010) BITS-2010 - VII Annual Meeting of the Bioinformatics Italian Society, Bari, 14-16 Aprile 2010
Grillo G., Licciulli F., Catalano D.
COSRaptor: a software for large-scale COS identification and polymorphic microsatellite in several plant species and cultivars
(2010)
Giorgio Grillo 1; Antonio Turi 2; Flavio Licciulli 1; Flavio Mignone 3; Sabino Liuni 1; Sandro Banfi 4; Vincenzo Alessandro Gennarino 4; David S. Horner 5; Giulio Pavesi 5; Ernesto Picardi 2; Graziano Pesole 1,2
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
(2010) in Nucleic acids research
Grillo G; Turi A; Licciulli F; Mignone F; Liuni S; Banfi S; Gennarino VA; Horner DS; Pavesi G; Picardi E; Pesole G.
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
(2010) in Nucleic acids research
Pannarale P; Scioscia G; Rubino F; Leo P; Pappadà G; D'Elia D; Grillo G; Vicario S; De Caro G; Gisel A; Mulè G; Susca A; Catalano D; Licciulli F
Social Database for Biodiversity
(2010)
Licciulli F1, Caratozzolo FM2, Cornacchia S2, D'Elia D1, D'Erchia AM1, Fosso B2, Grillo G1, Liuni S1, Mangiulli M2, Manzari C2, Mignone F3, Paluscio AM1, Picardi E2, Sbisà1, Tullo A1, Pesole G2,4
A bioinformatics workflow for the analysis of transcriptome data generated by deep-sequencing
(2010) BITS-2010 - VII Annual Meeting of the Bioinformatics Italian Society, Bari, 14-16 Aprile 2010
Licciulli F, Consiglio A, De Caro G, DElia D, Grillo G, Liuni S, Picardi E, Pesole G
A BIOINFORMATICS WORKFLOW FOR THE ANALYSIS OF NONCODING RNAs FROM DATA GENERATED BY DEEP-SEQUENCING
(2010) Next Generation Sequencing Workshop - Second Edition, Bari
Maria Mirto, Italo Epicoco, Sandro Fiore, Massimo Cafaro Alessandro Negro, Daniele Tartarini, Daniele Lezzi, Osvaldo Marra, Antonio Turi, Alessandra Ferramosca, Vincenzo Zara, Giovanni Aloisio?,Giacinto Donvito, Luciana Carota, Guido Cuscela, Giorgio Pietro Maggi, Giuseppe La Rocca, Mirco Mazzucato, Salvatore My, Giovanna Selvaggi,Gaetano Scioscia, Pietro Leo, Luigi Di Pace Graziano Pappada, Vincenzo Quinto, Margherita Berardi,Francesco Falciano , Andrew Emerson ,Elda Rossi,Giovanni Lavorgna, Andrea Vanni ,Lisa Bartoli, Pietro Di Lena, Piero Fariselli, Raffaele Fronza, Luciano Margara, Ludovica Montanucci, Pier Luigi Martelli, Ivan Rossi, Marco Vassura, and Rita Casadio,Tiziana Castrignanò ,Domenica D'Elia, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Andreas Gisel, Monica Santamaria, Saverio Vicario, Cecilia Saccone
,Anna Anselmo, David Horner, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Viviana Piccolo, Matteo Re, Federico Zambelli, Graziano Pesole
The LIBI Grid Platform for Bioinformatics
Maria Mirto, Italo Epicoco, Sandro Fiore, Massimo Cafaro Alessandro Negro, Daniele Tartarini, Daniele Lezzi, Osvaldo Marra, Antonio Turi, Alessandra Ferramosca, Vincenzo Zara, Giovanni Aloisio?,Giacinto Donvito, Luciana Carota, Guido Cuscela, Giorgio Pietro Maggi, Giuseppe La Rocca, Mirco Mazzucato, Salvatore My, Giovanna Selvaggi,Gaetano Scioscia, Pietro Leo, Luigi Di Pace Graziano Pappada, Vincenzo Quinto, Margherita Berardi,Francesco Falciano , Andrew Emerson ,Elda Rossi,Giovanni Lavorgna, Andrea Vanni ,Lisa Bartoli, Pietro Di Lena, Piero Fariselli, Raffaele Fronza, Luciano Margara, Ludovica Montanucci, Pier Luigi Martelli, Ivan Rossi, Marco Vassura, and Rita Casadio,Tiziana Castrignanò ,Domenica D'Elia, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Andreas Gisel, Monica Santamaria, Saverio Vicario, Cecilia Saccone
(2009) in , 2009
Castrignanò T 1; D'Antonio M 1; Anselmo A 2; Carrabino D 1; D'Onorio DM 1; D'Erchia A 3; Licciulli F 4; Mangiulli M 3; Mignone F 2; Pavesi G 2; Picardi E 3; Riva A 3,5; Rizzi R 6; Bonizzoni P 6; Pesole G 3,4.
ASPicDB: A database resource for alternative splicing analysis
(2008) in Bioinformatics (Oxf., Print)
Castrignanò T 1; D'Antonio M 1; Anselmo A 2; Carrabino D 1; D'Onorio DM 1; D'Erchia A 3; Licciulli F 4; Mangiulli M 3; Mignone F 2; Pavesi G 2; Picardi E 3; Riva A 3,5; Rizzi R 6; Bonizzoni P 6; Pesole G 3,4.
ASPicDB
(2008)
Castrignanò T., D'Antonio M., Anselmo A., Carrabino D., D'Onofrio DM., D'erchia A-. Licciulli F., Mangiulli M., Mignone F., Pavesi G., Picardi E., Riva A., Rizzi R., Bonizzoni P., Pesole G.
ASPicDB: A database resource for alternative splicing analysis. Bioinformatics.
(2007) in Bioinformatics (Oxf., Print)
R. Maglietta 1; A. Piepoli 2; D. Catalano 3; F. Licciulli 3; M. Carella 4; S. Liuni 3; G. Pesole 3,5; F. Perri 2; N. Ancona 1;
Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data
(2007) in Bioinformatics (Oxf., Print)
Elisabetta Sbisà 1*; Domenico Catalano 1; Giorgio Grillo 1; Flavio Licciulli 1; Antonio Turi 1; Sabino Liuni 1; Graziano Pesole 1,2; Anna De Grassi 1,2; Mariano F Caratozzolo1,2; Anna M D'Erchia 1,2; Beatriz Navarro 1; Apollonia Tullo 1; Cecilia Saccone 1,2; Andreas Gisel 1;
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.
(2007) in BMC bioinformatics
Maglietta R., Piepoli A., Catalano D., Licciulli F., Carella M., Liuni S., Pesole G., Perri F. and Ancona N.
Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data
(2007) in Bioinformatics (Oxf., Print)
DOnorio De Meo P., Carrabino D., Sanna N., Castrignano T.,Grillo G., Licciulli F., Liuni S., Re M., Mignone F., Pesole G.
A High Performance grid-web service framework for the identification of conserved sequence tags
(2007) in Future generation computer systems
Tulipano A, Donvito G, Licciulli F, Maggi G, Gisel A
Gene analogue finder: a GRID solution for finding functionally analogous gene products.
(2007) in BMC bioinformatics
Sbisà E; Catalano D; Grillo G; Licciulli F; Turi A; Liuni S; Pesole G; De Grassi A; Caratozzolo MF; D'Erchia AM; Navarro B; Tullo A; Saccone C; Gisel A.
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.
(2007) in BMC bioinformatics
Elisabetta Sbisà 1*; Domenico Catalano 1; Giorgio Grillo 1; Flavio Licciulli 1; Antonio Turi 1; Sabino Liuni 1; Graziano Pesole 1,2; Anna De Grassi 1,2; Mariano F Caratozzolo1,2; Anna M D'Erchia 1,2; Beatriz Navarro 1; Apollonia Tullo 1; Cecilia Saccone 1,2; Andreas Gisel 1;
p53FamTaG database
(2007)
NAVARRO B, DERCHIA A M, TULLO A, CARATOZZOLO M F, CAVONE D, DE GRASSI A, CATALANO D, GRILLO G, LICCIULLI F, TURI A, LIUNI S, GISEL A, PESOLE G, SACCONE C, SBISÀ E
p53FamTaG database: a public resource which integrates genome-wide in silico and experimental analyses of p53 family direct target genes
(2007) 3rd International p63/p73 workshop, Roma
Domenica D'Elia 1; A. Turi 1 ; F. Licciulli 1; D. Catalano 1; Cecilia Saccone;
The MitoDrome database and recent development
(2006) in Embnet news (Online)
Domenica D'Elia a; Domenico Catalano a; Flavio Licciulli a; Antonio Turi a; Gaetano Tripoli b; Damiano Porcelli b; Cecilia Saccone a,c; Corrado Caggese b;
The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae
(2006) in Mitochondrion (Amsterdam. Print)
Domenico Catalano 1; Flavio Licciulli 1; Antonio Turi 1; Giorgio Grillo 1;
Cecilia Saccone 1,2; and Domenica D'Elia 1;
MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa
Domenico Catalano 1; Flavio Licciulli 1; Antonio Turi 1; Giorgio Grillo 1;
(2006) in BMC bioinformatics
Catalano Domenico, Licciulli Flavio, Turi Antonio, Grillo Giorgio, Saccone Cecilia, D'Elia Domenica
MitoRes: A bio-sequences resource for mitochondria-related genes, transcripts and proteins
(2006)
Domenico Catalano; Flavio Licciulli; Antonio Turi; Giorgio Grillo; Cecilia Saccone; Domenica D'Elia
What the MitoRes Database Provides and How to use it
(2006) in Mitomatters (Riderwood Md. Online)
Mignone F.; Grillo G.; Licciulli F.; Iacono M.; Liuni S.; Kersey P.J.; Duarte J.; Saccone C.; Pesole G.
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
(2005) in Nucleic acids research
D. D'Elia, A. Turi, D. Catalano, F. Licciulli, G. Tripoli, D. Porcelli, C. Caggese
MitoDrome2: a database of OXPHOS nuclear genes in Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae
(2005) BITS 2005, Milano
Domenico Catalano, Vito Flavio Licciulli, Antonio Turi, Giorgio Grillo, Cecilia Saccone, Domenica D'Elia
MitoRes: a comprehensive resource of nuclear genes encoding for mitochondrial proteins in metazoa
(2005) 4th European Conference on Computational Biology 2005 (ECCB/05), Madrid
D. Catalano, F. Licciulli, A. Turi, G. Grillo and D. D'Elia
MitoRes: a bio-sequences resource of nuclearly encoded mitochondrial genes and products in metazoa
(2005) BITS 2005, Milano
F. Licciulli, D. Catalano, A. Turi, G. Grillo, G. Tripoli, D. Porcelli, C. Caggese, C. Saccone and D. D'Elia
MitoRes and MitoDrome2: two comprehensive resources of nuclear genes encoding
(2005) Workshop on Database Issues in Biological Databases (DBiBD) in conjunction with the Tenth International Conference on Database Theory (ICDT), Edinburgh
Gisel, A.; Panetta, M.; Grillo, G.; Licciulli, VF.; Liuni, S.; Saccone, C.; Pesole, G.
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions
(2004) in Bioinformatics (Oxf., Print)
Gisel A, Panetta M, Grillo G, Licciulli VF, Liuni S, Saccone C, Pesole G
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.
(2004) in Bioinformatics (Oxf., Print)
D. Catalano, A. Turi, F. Licciulli, G. Grillo, C. Saccone and D. D'Elia
MitoNuc: a specialized collection of nuclear metazoan genes encoding mitochondrial protein
(2004)
D. D'Elia, A. Turi, D. Catalano, F. Licciulli, G. Tripoli, D. Porcelli, C. Saccone, C. Caggese
MitoDrome: a content manager system to manage and retrieve data on nuclear encoded mitochondrial proteins of D. melanogaster, D. pseudoobscura and A. gambiae
(2004)
Grillo G., Licciulli F., Liuni S., Sbisà E., Pesole G.
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences
(2003) in Nucleic acids research
Marco Sardiello; Flavio Licciulli 2; Domenico Catalano 2; Marcella Attimonelli 1; Corrado Caggese
MitoDrome: a database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion.
(2003) in Nucleic acids research
Rainaldi G. 1, Volpicella M. 1, Licciulli F. 2, Liuni S. 3, Gallerani R. 1 and Ceci L.R. 3
PLMItRNA, a database on the heterogeneous genetic origin of mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes
(2003) in Nucleic acids research
D'Elia D., Leo P., Scioscia G., Lopriore P., Delle Foglie G., Licciulli F., Millot M., Weighardt F., Bonfini L. , Lorberth R. , Heinze P., Van den Eede G. , Attimonelli M., Buhk H.-J.
GMOs MolReg Database: una banca dati integrata a programmi di analisi di biosequenze per la catalogazione di Organismi Geneticamente Modificati a supporto delle attività dellEuropean Network of Genetic Modified Organism (GMO) Laboratories (ENGL).
(2003)
Catalano D., Licciulli F., Grillo G., Turi A., D'Elia D.
MitoNuc: una banca dati di geni nucleari che codificano per proteine a localizzazione mitocondriale
(2003)
D'Elia D., Catalano D., Licciulli F., Turi A., Tripoli G., Caggese C.
MitoDrome: una banca dati di geni nucleari di Drosophila M. che codificano per proteine a localizzazione mitocondriale
(2003)
D. D'Elia1, P. Leo3, G. Scioscia3, P. Lopriore3, G. Delle Foglie1, F. Licciulli1, M. Millot4, F. Weighardt4, L. Bonfini4, R. Lorberth5, P. Heinze4, G. Van den Eede4, M. Attimonelli2, H.-J. Buhk5
An example of an Integrated Bioinformatic System to support detection/quantification of GMOs
(2003) European Conference on Computational Biology (ECCB 2003), Parigi, 27-30 September 2003
D'Elia D., Leo P., Scioscia G., Lopriore P., Delle Foglie G., Licciulli F., Millot M., Weighardt F., Bonfini L. , Lorberth R. , Heinze P., Van den Eede G. , Attimonelli M., Buhk H.-J.
An Integrated Bioinformatics System to support sequences analysis, detection and quantification of Genetic Modified Organisms (GMOs)
(2003) 48° Congresso Nazionale SIB, Ferrara
Elisabetta Sbisa', Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Apollonia Tullo, Anna Maria D'Erchia, Andreas Gisel, Domenico Catalano, Graziano Pesole, Aurelio Reyes, D'Elia Domenica, Lanave Cecilia
Microchip contenente geni target umani della famiglia genica dell'oncosoppressore p53
(2003)
D'Elia D. 1, Leo P. 4, Scioscia G. 4, Lopriore P. 4, Delle Foglie G. 1, Licciulli F. 1, Millot M. 2, Weighardt F. 2, Bonfini L. 2 , Lorberth R. 3, Heinze P. 2, Van den Eede G. 2 , Attimonelli M. 5, Buhk H.-J. 3
Il GMOs MolReg: una Piattaforma Bioinformatica Integrata a supporto della individuazione, quantificazione e analisi di Organismi Geneticamente Modificati (OGM)
(2003)
De Leo F 1., Volpicella M. 2., Licciulli F.3., Liuni S. 3., Gallerani R. 2., Ceci L.R. 1.
PLANT-PIs: a database for plant protease inhibitors and their genes
(2002) in Nucleic acids research
Attimonelli M. , Catalano D. , Gissi C. , Grillo G. , Licciulli F. , Liuni S. , Santamaria M. , Pesole G. , Saccone C.
Mitonuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002
(2002) in Nucleic acids research
Lanave C., Licciulli F., De Robertis M., Marolla A., Attimonelli M.
Update of ammtdb: a database of multi-aligned Metazoa mitochondrial DNA sequences
(2002) in Nucleic acids research
Pesole G., Liuni S., Grillo G., Licciulli F., Mignone F., Gissi C., Saccone C.
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mrnas. Update 2002
(2002) in Nucleic acids research
Liuni Sabino, Licciulli Flavio, Giorgio Grillo,Graziano Pesole
Banca Dati UTRdb e collezione UTRSite
(2002)
De Leo F 1., Volpicella M. 2., Licciulli F.3., Liuni S. 3., Gallerani R. 2., Ceci L.R. 1.
PLANT-PIs database
(2002)
Damiano F 1, Gallerani R 1, Liuni S 2, Licciulli F 3, Ceci LR. 2
PLMItRNA, a database for mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes
(2001) in Nucleic acids research
Pesole G., Mignone F., Gissi C., Grillo G., Licciulli F., Liuni S.
Structural and functional features of eukaryotic mRNA untranslated regions
(2001) in Gene (Amst.)
Damiano F 1, Gallerani R 1, Liuni S 2, Licciulli F 3, Ceci LR. 2
PLMItRNA database
(2001)
Lanave, C.; Liuni, S.; Licciulli, F.; Attimonelli, M.
Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequence
(2000) in Nucleic acids research
Pesole, G.; Gissi, C.; Grillo, G.; Licciulli, F.; Liuni, S; Saccone, C
Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs
(2000) in Gene (Amst.)
Pesole, G.; Liuni, S.; Grillo, G.; Licciulli, F.; Larizza, A.; Makalowski, W.; Saccone, C.
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5 ' and 3 ' untranslated regions of eukaryotic mRNAs
(2000) in Nucleic acids research
M. Attimonelli*, N. Altamura1, R. Benne2, A. Brennicke3, J. M. Cooper4, D. D'Elia5, A. de Montalvo6, B. de Pinto1, M. De Robertis, P. Golik7, V. Knoop3, C. Lanave1, J. Lazowska7, F. Licciulli5, B. S. Malladi8, F. Memeo, M. Monnerot7, R. Pasimeni, S. Pilbout7, A. H. V. Schapira9, P. Sloof2 and, C. Saccone
MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status.
(2000) in Nucleic acids research (Online)
V. Volpetti, R. Gallerani, C. De Benedetto, S. Liuni, F. Licciulli and L.R. Ceci.
PLMItRNA, a database for tRNAs and tRNA genes in plant mitochondria: enlargement and updating.
(2000) in Nucleic acids research
Graziano Pesole 1,4 ; Carmela Gissi 2; Domenico Catalano 3; Giorgio Grillo 3; Flavio Licciulli 3; Sabino Liuni 3,4; Marcella Attimonelli 2 ; Cecilia Saccone 2,3,4 ;
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins.
(2000) in Nucleic acids research
D. Catalano, F. Licciulli, D. D'Elia and M. Attimonelli1
Update of KEYnet: a gene and protein names database for biosequences functional organisation
(2000) in Nucleic acids research
F. Licciulli 2; D. Catalano 2 ; D. D'Elia2 ; V. Lorusso 3; M. Attimonelli 1;
KEYnet: a keywords database for biosequences funtional organization.
(1999) in Nucleic acids research
L.R. Ceci, M. Volpicella, S. Liuni, V. Volpetti, F. Licciulli and R. Gallerani.
PLMItRNA, a database for higher plant mitochondrial tRNAs and their genes
(1999) in Nucleic acids research
Lanave, C.; Attimonelli, M.; De Robertis, M.; Licciulli, F.; Liuni, S.; Sbisa, E.; Saccone, C.
Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences
(1999) in Nucleic acids research
F. Licciulli 2; D. Catalano 2 ; D. D'Elia2 ; V. Lorusso 3; M. Attimonelli 1;
KEYnet: a keywords database for biosequences functional organization
(1999)
Lanave, C.; Attimonelli, M.; De Robertis, M.; Licciulli, F.; Liuni, S.; Sbisa, E.; Saccone, C.
AMmtDB database
(1999)
M. Attimonelli 1, D. Caló 1, J. M. Cooper 5, A. de Montalvo 2, F. Licciulli 3, D. Sasanelli 1, K. Stevens 4, B. S. Malladi 5, C. Saccone 1 and A. H. V. Shapira 4
The mitBASE human dataset structure
(1998) in Nucleic acids research (Online)
M. Attimonelli*, N. Altamura1, R. Benne2, A. Brennicke3, J. M. Cooper4, D. D'Elia5, A. de Montalvo6, B. de Pinto1, M. De Robertis, P. Golik7, V. Knoop3, C. Lanave1, J. Lazowska7, F. Licciulli5, B. S. Malladi8, F. Memeo, M. Monnerot7, R. Pasimeni, S. Pilbout7, A. H. V. Schapira9, P. Sloof2 and, C. Saccone
MitBASE: a comprehensive and integrated mitochondrial DNA database
(1998)
