Domenica D’Elia

The information published in this page are entirely managed by DOMENICA D'ELIA who is completely responsible for it.

Dr Domenica D'Elia is a molecular biologist. She got a PhD in Biochemistry and Molecular Biology from the University of Bari in 1996. Since 2001 she has a permanent position at the Institute for Biomedical Technologies of the Italian National Research Council. Presently, she is: -Chair of the EMBnet Executive Board - The Global Bioinformatics Network since 2016 (https://www.embnet.org/wp/); -Member and Secretary of the Executive Board of GOBLET - the Global Organization for Bioinformatics Learning, Education & Training from 2019 (https://www.mygoblet.org/); -Member of the Editorial Board of the journal: Genomics, Proteomics and Bioinformatics (IF 6.615) since 2016; -Member of the Executive Editorial Board, Section Editor and Copyeditor of the EMBnet.journal (former EMBnet.news) since 2006; -Management Committee Member of the COST Action "Statistical and machine learning techniques in human microbiome studies" (ml4microbiome: CA181319) since 2019 (https://www.cost.eu/actions/CA18131/#tabs|Name:overview); -Member of the "Short Term Scientific Mission" Committee of the COST Action CA18131 from 2019; - Working Group Leader of WG4 - Dissemination & Training of the COST Action CA18131, since 2020; -Node Manager of the Italian National EMBnet Node, The Global Bioinformatics Network, since 2006; -Member of the Italian Bioinformatics Society since 2001; -Member of the Interdepartmental Project of the CNR Foresight (http://foresight.cnr.it/about-us) from 2019; -Member of Nutrheff - Nutraceutical Health Enhancing Functional Food Network: http://www.nutrheff.cnr.it/

Research activity Since 1996 her activity has been focused in the Bioinformatics research field for the development of biological databases, tools for integration and analysis of omics data and on the application of machine learning and data mining technologies for the analysis of Big Data (hierarchical & multi-type hierarchical clustering for network reconstruction, transfer learning) in collaboration with the Computer Science Department of the University of Bari. These activities led to the production of the following products: MitBASE, Human MitBase, KeyNet, MitoDrome, MitoRes, UTRminer, the LIBI Grid platform, Molecular Biodiversity Laboratory DB, HOCCLUS, HOCCLUS2, LP-HCLUS, ComiRNet, NonCode aReNA DB. She also collaborates with the CREA and University of Bari, at a study on the effects of table grapes on the expression of genes involved in the immune response and chronic inflammation. At CNR-ITB, she collaborates in a study on the effects of plant miRNAs on human gene expression (InterOmics Flagship Project).

Other publication name:

Domenica D'Elia

Other publication name:

D'Elia, D.

Interest areas:

Bioinformatics, Functional Genomics & Transcriptomics, Regulatory Network Reconstruction, Post-Transcriptional Regulation of Gene Expression, non-coding RNAs, micro RNAs


Contacts

Phone: +39 080 5929674
Fax: +39 080 5929690
Skype: domenicadelia
Address: CNR - Istituto di Tecnologie Biomediche, Via Amendola 122/D, 70126 Bari

International Ids

Scopus Author ID: 55760390600
Research Gate: Domenica_DElia2
Google Scholar: wBylt4AAAAAJ

Education

Diagnostica Oncologica: Principi e Metodi di Applicazione delle Tecniche morfometriche ed immunoistochimiche
Università degli Studi di Bari, Facoltà di Medicina e Chirurgia, Area di Formazione Post Laurea, Corsi di Perfezionamento - P.zza Giulio Cesare nr.11 - 70124 Bari - Italia
Graduation date: 1998-12-04
Attendance time period: 01/1997 - 12/1998

Scienze Biologiche
Università degli Studi di Bari Aldo Moro - Piazza Umberto I, 1, 70121 Bari
Grade: 110/110 cum Laude
Graduation date: 1991-02-15
Attendance time period: 10/1984 - 12/1989
Thesis: Curvatura del DNA come sito d'interazione con proteine all'Ori-L del DNA mitocondriale di ratto

Dottorato di Ricerca in Biochimica e Biologia Molecolare
Università degli studi di Bari Aldo Moro - Piazza Umberto I, 1, 70121 Bari
Thesis: Purificazione di due fattori proteici che interagiscono con regioni curve del DNA mitocondriale di ratto


Languages

Production Understanding
Written Oral Written Oral Notes
Italian - Native or bilingual proficiency
English - Professional working proficiency

Research activities classification (ERC)

LIFE SCIENCES

Skills

BIOLOGIA MOLECOLARE E BIOINFORMATICA: BANCHE DATI BIOLOGICHE E ALGORITMI PER L'ANALISI DI DATI MOLECOLARI, ANALISI FUNZIONALI PER LO STUDIO DEI MECCANISMI DI REGOLAZIONE GENICA POST-TRASCRIZIONALE, ANALISI DI DATI DI TRASCRITTOMICA, INTERAZIONI MOLECOLARI E NETWORK DI REGOLAZIONE GENICA
CAPACITA' COMUNICATIVA E COMPETENZE IN: DISSEMINATION, COMMUNITY BUILDING, NETWORKING
CAPACITA' E COMPETENZE DIDATTICHE: INSEGNAMENTO DI BASE E AVANZATO IN BIOINFORMATICA E METODOLOGIE DI ANALISI MOLECOLARE FUNZIONALE

Research products

Susanne Hollmann https://orcid.org/0000-0001-9032-20351,2, Andreas Kremer3, ?pela Baebler https://orcid.org/0000-0003-4776-71644, Christophe Trefois https://orcid.org/0000-0002-8991-68105, Kristina Gruden4, Witold R. Rudnicki6, Weida Tong7, Aleksandra Gruca8, Erik Bongcam-Rudloff9, Chris T. Evelo https://orcid.org/0000-0002-5301-314210,11, Alina Nechyporenko12, Marcus Frohme13, David ?afránek14, Babette Regierer https://orcid.org/0000-0002-5263-45532,15, Domenica D'Elia https://orcid.org/0000-0003-3787-383616

The need for standardisation in life science research - an approach to excellence and trust

(2021) in F1000Research
Isabel Moreno-Indias1,2*, Leo Lahti3, Miroslava Nedyalkova4, Ilze Elbere5, Gennady Roshchupkin6, Muhamed Adilovic7, Onder Aydemir8, Burcu Bakir-Gungor9, Enrique Carrillo-de Santa Pau10, Domenica D'Elia11, Mahesh S. Desai12,13, Laurent Falquet14,15, Aycan Gundogdu16,17, Karel Hron18, Thomas Klammsteiner19, Marta B. Lopes20,21, Laura Judith Marcos-Zambrano10, Cláudia Marques22, Michael Mason23, Patrick May24, Lejla Pa?i?25, Gianvito Pio26, Sándor Pongor27, Vasilis J. Promponas28, Piotr Przymus29, Julio Saez-Rodriguez30, Alexia Sampri31, Rajesh Shigdel32, Blaz Stres33,34,35, Ramona Suharoschi36, Jaak Truu37, Ciprian-Octavian Truic?38, Baiba Vilne39, Dimitrios Vlachakis40, Ercument Yilmaz41, Georg Zeller42, Aldert L. Zomer43, David Gómez-Cabrero44 and Marcus J. Claesson45 on behalf of ML4Microbiome

Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions

(2021) in Frontiers in microbiology
Milella, Rosa Anna; Gasparro, Marica; Alagna, Fiammetta; Cardone, Maria Francesca; Rotunno, Silvia; Ammollo, Concetta Tiziana; Semeraro, Fabrizio; Tullo, Apollonia; Marzano, Flaviana; Catalano, Domenico; Antonacci, Donato; Colucci, Mario; D'Elia, Domenica

Gene expression signature induced by grape intake in healthy subjects reveals wide-spread beneficial effects on peripheral blood mononuclear cells

(2020) in Journal of Functional Foods
Emanuele Pio Barracchia1 , Gianvito Pio1* , Domenica D'Elia3 and Michelangelo Ceci1,2,4

Prediction of new associations between ncRNAs and diseases exploiting multi-type hierarchical clustering

(2020) in BMC bioinformatics
Rosa Anna Milella a, **, Marica Gasparro a, Fiammetta Alagna a, 1, Maria Francesca Cardone a, Silvia Rotunno a, 2, Concetta Tiziana Ammollo b, Fabrizio Semeraro b, Apollonia Tullo c, Flaviana Marzano c, Domenico Catalano d, Donato Antonacci a, Mario Colucci b, Domenica D'Elia d, *

Microarray data and pathway analyses of peripheral blood mononuclear cells from healthy subjects after a three weeks grape-rich diet

(2020) in Data in brief
Flaviana Marzano, Mariano Francesco Caratozzolo, Arianna Consiglio, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisa', Domenica D'Elia* , Apollonia Tullo* and Domenico Catalano

Plant miRNAs reduce cancer cell proliferation by targeting MALAT1 and NEAT1: a beneficial cross-kingdom interaction

(2020) in Frontiers in genetics
Hollmann, Susanne(1); Frohme, Marcus(2); Endrullat, Christoph(3); Kremer, Andreas(4); D'Elia, Domenica(5); Regierer, Babette(6); Nechyporenko, Alina(6)

Ten simple rules on how to write a standard operating procedure

(2020) in PLoS computational biology
Domenica D'Elia1, Chris Evelo2,3, Babette Regierer 4,5, Susanne Hollmann 4,6

Standards Make The World Go Round

(2020) in EMBnet journal
Barracchia E.P.; Pio G.; D'Elia D.; Ceci M.

Prediction of New Associations between ncRNAs and Diseases Exploiting Multi-Type Hierarchical Clustering

(2020) SEBD 2020 -28th SYMPOSIUM ON ADVANCED DATABASE SYSTEMS, Villasimius, Sardinia, Italy, 21/06/2020, 21-24/06/2020
Javier De Las Rivas (1), Domenica D'Elia (2), Eija Korpelainen (3), Annette McGrath (4), Asif M. Khan (5), Michelle D. Brazas (6), Teresa K. Attwood (7), Celia Van Gelder (8)

GOBLET: fostering international collaboration for advanced Learning, Education and Training in Computational Biology and Bioinformatics

(2020) ISMB 2020 - 28th Conference on Intelligent Systems for Molecular Biology, Virtual - Montreal (Canada), 13-16 July, 2020
Visualize all the publications (since 2016)