The information published in this page are entirely managed by DOMENICA D'ELIA who is completely responsible for it.
Paolo Mignone1,3, Gianvito Pio1,3, Domenica D'Elia2, Donato Malerba1,3, Michelangelo Ceci1,3
Exploiting Transfer Learning for the Reconstruction of the Human Gene Regulatory Network
(2019) in Bioinformatics (Oxf., Online)
Eleni Papakonstantinou 1, 2 , Flora Bacopoulou 3 , Dimitrios Brouzas 4 , Vasileios Megalooikonomou 5 , Domenica D'Elia 6 , Erik Bongcam-Rudloff 7 , Dimitrios Vlachakis 1, 2, 8
NOTCH3 and CADASIL Syndrome: A Genetic and Structural Overview
(2019) in EMBnet journal
Bonnici V1, De Caro G2, Constantino G1, Liuni S2, D'Elia D2, Bombieri N1, Licciulli F2, Giugno R1.
Arena-Idb: a platform to build human non-coding RNA interaction networks
(2018) in BMC bioinformatics
Susanne Hollmann*1, 2, Babette Regierer1, Domenica D'Elia3, Kristina Gruden4, ?pela Baebler4, Marcus Frohme5, Juliane Pfeil5, Ugur Sezerman6, Chris T Evelo7, Friederike Ehrhart7, Berthold Huppertz8, Erik Bongcam-Rudloff9, Christophe Trefois10, Aleksandra Gruca11, Deborah A. Duca12, Gianni Colotti13, Roxana Merino-Martinez14, Christos Ouzounis15, Oliver Hunewald16, Feng He16, Andreas Kremer17
Standardization in Life-science Research - Making the Case for Harmonization to Improve Communication and Sharing of Data amongst Researchers
(2018) ICT Innovation Conference 2018 - Engineering and Life Sciences, Metropol Lake Resort, Ohrid, Macedonia, 17/09/2018, 19 /09/2018
Hollmann S.; Attwood T.K.; Bongcam-Rudloff E.; Duca D.; D'Elia D.; Endrullat C.; Frohme M.; Messerschmidt K.; Regierer B.
Standardization and Quality Assurance in Life-Science Research - Crucially Needed or Unnecessary and Annoying Regulation?
(2018) 10th International Conference, ICT Innovations 2018, , September 17-19, 2018, Proceedings, Ohrid, Macedonia, 17/09/2018, 19-09/2018
Domenica D'Elia1, Babette Regierer2, Teresa K. Attwood3, Erik Bongcam-Rudloff4, Susanne Holmann5
Modern research requires the use of standards: the CHARME project and its aims
(2016) Combined CHARME - EMBnet and NETTAB 2016 Workshop on Reproducibility, standards and SOP in bioinformatics, CNR, Piazza Aldo Moro, 7, Roma, 25/10/2016, 26/10/2016
Domenica D'Elia
2016 Big Data Forum for Life and Health Sciences
(2016) 2016 Big Data Forum for Life and Health Sciences, Beijing Institute of Genomics, Chinese Academy of Sciences No.1 Beichen West Road, Chaoyang District Beijing 100101, China, 05/12/2016, 08/12/2016
D'Elia D(1), Regierer B(2), Hollmann S(3)
Standardisation in Life Sciences - with CHARME towards a unified standardisation European strategy
(2016) 13th Annual Meeting of the Bioinformatics Italian Society, University of Salerno, Italy, 15/06/2016, 17/06/2016
Vincenzo Bonnici1*, Giorgio De Caro2*, Sabino Liuni2, Domenica D'Elia2, Nicola Bombieri1, Rosalba Giugno1*, Flavio Licciulli2*
Integrating bioinformatics resources for modelling Human non-coding RNA networks
(2016) Joint CHARME-EMBnet-NETTAB 2016 Workshop Reproducibility, standards and SOP in Bioinformatics, CNR, Piazzale Aldo Moro, 7, Roma, 25/10/2016, 26/10/2016
Gianvito Pio1, Francesco Serafino1, Emanuele Barracchia1, Domenica D'Elia2 and Michelangelo Ceci1
Multi-type clustering for the identification of lncRNA-disease relationships
(2016) Joint CHARME-EMBnet-NETTAB 2016 Workshop Reproducibility, standards and SOP in Bioinformatics, CNR, Piazzale Aldo More, 7, Roma, 25/10/2016, 26/10/2016
Domenica D'Elia 1, Babette Regierer 2, Susanne Hollmann 3
With CHARME towards standardisation in life sciences
(2016)
Giorgio De Caro 1, Arianna Consiglio 1, Domenica D'Elia 1?, Andreas Gisel 1,2, Giorgio Grillo 1, Sabino Liuni 1, Angelica Tulipano 1, Flavio Licciulli 1
The NonCode aReNA DB: a non-redundant and integrated collection of non- codingRNAs
(2015) in EMBnet journal
Domenica D'Elia 1 , Vicky Schneider-Gricar 2, Rubina Kalra 2, Cesar Bonavides-Martinez 3, Rafael Jimenez 4
2014 Annual General Meeting: Publicity & Public Relations Project Committee Report
(2015) in EMBnet journal
Gianvito Pio1+, Michelangelo Ceci1*+, Donato Malerba1+ and Domenica D'Elia2+
ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks
(2015) in BMC bioinformatics
Angelica Tulipano1, Fabrizio Cillo2, Anna Vittoria Carluccio2, Giorgio De Caro1, Flavio Licciulli1, Domenica D'Elia, Livia Stavolone1,3, Andreas Gisel1,3
DNA and RNA viruses infection in plant: two different ways to dynamically change the host's epigenetic profile
(2015) NETTAB 2015 & Integrative Bioinformatics 2015 Joint Symposium, Bari, 14-16 October 2015
Flaviana Marzano1, Mariano Caratozzolo1, Sabino Liuni1, Elisabetta Sbisà, Domenica D'Elia1, Apollonia Tullo1, Domenico Catalano2
Effects of edible plant microRNAs on cancer cell proliferation: a beneficial cross-kingdom interaction
(2015) NETTAB 2015 & Integrative Bioinformatics 2015, Bari, 14-16 October 2015
Angelica Tulipano1, Anna Vittoria Carluccio2, Giorgio De Caro1, Domenica D'Elia1, Fabrizio Cillo2, Flavio Liciulli1, Livia Stavolone2, 3, Andreas Gisel1, 3
Comparison of co-regulation of DNA methylation and smallRNA expression between Arabidopsis infected with RNA and DNA virus
(2015) Keystone Symposia "DNA Methylation", Keystone Resort, Keystone, Colorado, USA, March 29--April 3, 2015
Giorgio De Caro 1, Arianna Consiglio 1, Domenica D'Elia 1 ?, Andreas Gisel 1,2, Giorgio Grillo 1, Sabino Liuni 1, Angelica Tulipano 1, Flavio Licciulli 1
The NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs
(2015) COST Conference "Next Generation Sequencing: a look into the future", Bratislava, Slovakia, 16-17 March 2015
Angelica Tulipano1, Anna Vittoria Carluccio2, Giorgio De Caro1, Domenica D'Elia1, Fabrizio Cillo2, Flavio Liciulli1, Livia Stavolone2, 3, Andreas Gisel1, 3,
Comparison of co-regulation of DNA methylation and smallRNA expression between Arabidopsis infected with RNA and DNA virus
(2015) KEYSTONE SYMPOSIA ON MOLECULAR AND CELLULAR BIOLOGY - DNA Methylation (Z1) - Joint Meeting: Epigenomics (Z2), Keystone Resort o Keystone, Colorado USA, 29-31 March-1-2 April 2015
Cillo F., Tulipano A., Carluccio A.V., De Caro G., Licciulli F., D'elia D., Stavolone L., Gisel A.
Plant responses to two diverse viruses involve different DNA methylation profiles
(2015) Convegno congiunto SIBV-SIGA "Feeding the planet: plant science and breeding for the future of agriculture", Milano, Italy, 8-11 Settembre 2015
Giorgio De Caro1, Arianna Consiglio1, Domenica D'Elia1, Andreas Gisel1, Giorgio Grillo1, Sabino Liuni1, Angelica Tulipano1 and Flavio Licciulli1
NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs
(2015) BITS 2015 Twelfth Annual Meeting of the Bioinformatics Italian Society, Milan, 3-5 Giugno 2015
Gianvito Pio1, Michelangelo Ceci1, Domenica D'Elia2, Donato Malerba1
Improving the Prediction of miRNA:mRNA Interactions by Exploiting Co-Clustering Methods
(2015) NETTAB 2015 & Integrative Bioinformatics 2015 Joint Symposium, Bari, 14-16 October 2015
Domenica D'Elia
NETTAB & IB 2015 "Two-Day Hands-on Tutorial"
(2015)
Domenica D'Elia
Recent highlights from the CNR Institute for Biomedical Technologies: EMBnet Italy
(2015)
Pio G(1) , Ceci M(1) , D'Elia D(2) , Malerba D(1)
mirNET: a web-based system for the analysis of miRNA:mRNA regulatory networks
(2014) BITS Annual Meeting 2014, Roma, 26-28 February 2014
Pio G(1) , Ceci M(1) , Malerba D(1), D'Elia D (2)
ComiRNet: a database of predicted miRNA:mRNA interactions and regulatory networks
(2014) NGS and non-coding RNA data analysis" workshop II (2014), Plovdiv, Bulgaria, 15-16 May 2014
De Caro G1*, Tulipano A1*, Consiglio A1, D'Elia D1, Grillo G1, Marinaro M2, Liuni S1, Licciulli F1 and Gisel A1
*Equal contributors
nc-aReNA: an integrated bioinformatics platform for non-coding RNA-seq data classification and annotation
De Caro G1*, Tulipano A1*, Consiglio A1, D'Elia D1, Grillo G1, Marinaro M2, Liuni S1, Licciulli F1 and Gisel A1
(2014) NGS and non-coding RNA data analysis workshop II (2014), Plovdiv, Bulgaria, 15-16 May 2014
Domenica D'Elia, Sabino Liuni
BiP-Day 2013: "Prima Giornata della Bioinformatica Pugliese" - Workshop report
(2014) in EMBnet journal
Gianvito Pio1, Donato Malerba1, Domenica D'Elia2 and Michelangelo Ceci1*
Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach
(2014) in BMC bioinformatics
Gianvito Pio (1), Michelangelo Ceci (1), Donato Malerba (1), Domenica D'Elia (2)
ComiRNet - The Database of Predicted miRNA Regulatory Networks
(2014)
Pio, Gianvito; Ceci, Michelangelo; D'Elia, Domenica; Malerba, Donato
Learning to combine miRNA target predictions: A semi-supervised ensemble learning approach (Discussion Paper)
(2014) 22nd Italian Symposium on Advanced Database Systems, SEBD 2014, Sorrento, Italy, 16-18 June 2014
1 Pio, Gianvito;1 Ceci, Michelangelo; 2 D'Elia, Domenica; 1 Malerba, Donato
Network reconstruction for the identification of miRNA:mRNA interaction networks
(2014) European Conference on Machine Learning and Knowledge Discovery in Databases, ECML PKDD 2014; Nancy; France; 15 September 2014 through 19 September 2014; Code 107499, Nacy, France, 15-19 September 2014
Pio G (1), Ceci M (1) , Malerba D (1), D'Elia D (2)
Discovery of miRNA-Gene regulatory networks by using an integrative data-mining approach
(2014) NETTAB 2014 - From Structural Bioinformatics to Integrative System Biology & "2014: Crystal (cl)Year meeting", Torino, 15-17 Ottobre 2014
Pio G(1) , Ceci M(1) , Malerba D(1), D'Elia D (2)
Discovery of miRNA-Gene regulatory networks by using an integrative data-mining approach: the ComiRNet database
(2014) InterOmics & MIMOmics Symposium 2014, Roma, 24-26 September 2014
Pio G., Ceci M., Malerba D., D'Elia D.
A two-stepped computational approach for miRNA-gene regulatory networks discovery
(2014) Epigengetics, coding and non-coding RNAs: Challenging NGS data, Bari, 25-26 June 2014
Gianvito Pio, Michelangelo Ceci, Domenica D'Elia, Donato Malerba
Network reconstruction for the identification of miRNA:mRNA interaction networks
(2014) The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, Nancy, France, September 15th to 19th, 2014
Domenica D'Elia - Manager of the EMBnet National Node, Italy
EMBnet AGM 2014 - P&PR PC activity report: June 2013 - May 2014
(2014)
Gianvito Pio1, Domenica D'Elia2, Donato Malerba1, Michelangelo Ceci1
Semi-supervised ensemble learning to boost miRNA target predictions
(2013) in EMBnet journal
Domenica D'Elia
The Italian EMBnet Node - National Research Council of Italy - Institute for Biomedical Technologies Bari, Italy
(2013)
Claudia Calabrese1+, Marina Mangiulli2+, Caterina Manzari2, Anna Maria Paluscio3, Mariano Francesco Caratozzolo3, Flaviana Marzano3, Ivana Kurelac1, Anna Maria D'Erchia2, Domenica D'Elia3, Flavio Licciulli3, Sabino Liuni3, Ernesto Picardi2, Marcella Attimonelli2, Giuseppe Gasparre1, Anna Maria Porcelli4, Graziano Pesole25, Elisabetta Sbisà3 and Apollonia Tullo3*
A platform independent RNA-Seq protocol for the detection of transcriptome complexity
(2013) in BMC genomics
Gianvito Pio1*, Michelangelo Ceci1*, Domenica D'Elia2, Corrado Loglisci1 and Donato Malerba1
A novel biclustering algorithm for the discovery of meaningful biological correlations between microRNAs and their target genes
(2013) in BMC bioinformatics
Tulipano A, Consiglio A, D'Elia D, Grillo G, Liuni S, Licciulli F and Gisel A
Platform for functional ncRNA analysis of NGS data
(2013) Interomics Meeting, Roma, 06/03/2013, 06/04/2013
Gianvito Pio1*, Michelangelo Ceci1*, Domenica D'Elia2, Corrado Loglisci1 and Donato Malerba1
HOCCLUS2
(2013)
1M. Ceci, 1G. Pio, 2D. D'Elia, 1C. Loglisci, 1D. Malerba
Analysis of Gene-microRNA Maps for Regulatory Network Discovery
(2012) Spring Workshop on Mining and Learning, Germany date:18-20 April 2012, Germany, 18-20 April 2012
Gianvtio Pio (1), Donato Malerba(1), Michelangelo Ceci(1), Domenica D'ELia(2)
HOCCLU2: a data mining tool for easily handling interactions data and discovering regulatory networks
(2012) Bioinformatics Workshop "Evaluation of Test Cases", Milano, 12-14 December 2012
Claudia Calabrese1,§, Marina Mangiulli2,§, Caterina Manzari2, Anna Maria Paluscio3, Mariano
Francesco Caratozzolo3, Flaviana Marzano3, Ivana Kurelac1, Anna Maria D'Erchia2, Domenica
D'Elia3, Flavio Licciulli3, Sabino Liuni3, Ernesto Picardi2, Marcella Attimonelli2, Giuseppe Gasparre1,
Anna Maria Porcelli4, Graziano Pesole2,5, Elisabetta Sbisà3 and Apollonia Tullo3
A NOVEL GENERAL-PURPOSE RNA-SEQ PROTOCOL OPTIMIZING THE DETECTION OF TRANSCRIPTOME EXPRESSION COMPLEXITY
Claudia Calabrese1,§, Marina Mangiulli2,§, Caterina Manzari2, Anna Maria Paluscio3, Mariano
Francesco Caratozzolo3, Flaviana Marzano3, Ivana Kurelac1, Anna Maria D'Erchia2, Domenica
D'Elia3, Flavio Licciulli3, Sabino Liuni3, Ernesto Picardi2, Marcella Attimonelli2, Giuseppe Gasparre1,
(2012) Next Generation Sequencing & Epigenomics 4° Bari Workshop, Bari, 05/12/2012, 07/12/2012
Gianvito Pio1 and Michelangelo Ceci2 and Corrado Loglisci3 and Domenica D'Elia4 and Donato Malerba5
Hierarchical and Overlapping Co-Clustering of mRNA:miRNA Interactions.
(2012) ECAI 2012, 20th European Conference on Artificial Intelligence, Montpellier, France, 27-31/08/2012
G. Pio1, M. Ceci1, D. D'Elia2, C. Loglisci1, D. Malerba
A novel biclustering algorithm for the discovery of meaningful biological correlations between miRNAs and mRNAs
(2012) BITS 2012 - Ninth Annual Meeting of the Bioinformatics Italian Society, Catania, 2-4 May 2012
Gianvito Pio, Michelangelo Ceci, Corrado Loglisci, Donato Malerba, Domenica D'Elia
The integration of microRNA target data by biclustering techniques opens new roads for signaling networks analysis
(2012) NETTAB 2012 Workshop on "Integrated Bio-Search", Como, 14-16 November 2012
Alfredo Ferro1, Rosalba Giugno1, Alfredo Pulvirenti1, Domenica D'Elia2 ?, Manuela Helmer-Citterich3, Paolo Romano4
BITS 2012: Ninth Annual Meeting of the Bioinformatics Italian Society
(2012) EMBnet Stichting, Uppsala (Svezia) in BITS 2012 - Ninth Annual Meeting of the Bioinformatics Italian Society Meeting Abstracts, 2012
Domenica D'Elia1, Marina Mangiulli2, Monica Santamaria1, AnnaMaria Paluscio1, Caterina Manzari1,2, Mariano Francesco Caratozzolo1, Flaviana Marzano3,
Marinella Marzano1, Elda Perlino1, Paolo Fuzio1, Alessio Valletti2, Anna Maria D'Erchia2, Arianna Consiglio1, Andreas Gisel1, Saverio Vicario1, Bachir Balech1,Flavio Licciulli1, Giorgio Grillo1, Sabino Liuni1, Ernesto Picardi2, Graziano Pesole2,4, Sbisà1, Apollonia Tullo1
454 GS-FLX TITANIUM PLATFORM: THE EXPERIENCE OF ITB-BA
Domenica D'Elia1, Marina Mangiulli2, Monica Santamaria1, AnnaMaria Paluscio1, Caterina Manzari1,2, Mariano Francesco Caratozzolo1, Flaviana Marzano3,
(2011) Next Generation Sequencing Workshop, Third Edition, Bari, 12/10/2011, 14/10/2011
Domenica D'Elia
Italian EMBnet node: AGM2011 report
(2011) in EMBnet journal
Domenica D'Elia
Publicity and Public Relations Project Committee: AGM2011 report
(2011) in EMBnet journal
Teresa K Attwood, Andreas Gisel, Etienne de Villiers, Erik Bongcam-Rudloff, Domenica D'Elia, Pedro Fernandes, Georgios Magklaras
Report of the EMBnet AGM 2011 Workshop
(2011) in EMBnet journal
1 Michelangelo Ceci, 1 Corrado Loglisci, 1Eliana Salvemini, 2 Domenica D'Elia, and 1Donato Malerba
Mining Spatial Association Rules for Composite Motif Discovery
(2011) in Mathematical Approaches to Polymer Sequence Analysis and Related Problems, 2011
Domenica D'Elia1, Marina Mangiulli2, Anna Maria Paluscio1, Caterina Manzari1, Mariano Francesco Caratozzolo1, Flaviana Marzano3, Anna Maria D'Erchia2, Flavio Mignone4, Flavio Licciulli1, Giorgio Grillo1, Sabino Liuni1, Graziano Pesole2,5, Elisabetta Sbisà1, Apollonia Tullo1
Identification of new p53 regulatory networks through NGS data analysis
(2011) Next Generation Sequencing Workshop, Third Edition, Bari, 12/10/2011, 14/10/2011
Pannarale P, Scioscia G, Rubino F, Leo P, Pappadà G, DElia D, Grillo G, Vicario S, De Caro G, Gisel A, Mulè G, Susca 4, Catalano D, Licciulli F
Social Database for Biodiversity
(2010) BITS-2010 - VII Annual Meeting of the Bioinformatics Italian Society, Bari, 14-16 Aprile 2010
Ferdandes P, Klucar L, D'Elia D, Norling M
2010 Annual General Meeting - Publicity & Public Relations Project Committee Report
(2010) in EMBnet journal
Licciulli F1, Caratozzolo FM2, Cornacchia S2, D'Elia D1, D'Erchia AM1, Fosso B2, Grillo G1, Liuni S1, Mangiulli M2, Manzari C2, Mignone F3, Paluscio AM1, Picardi E2, Sbisà1, Tullo A1, Pesole G2,4
A bioinformatics workflow for the analysis of transcriptome data generated by deep-sequencing
(2010) BITS-2010 - VII Annual Meeting of the Bioinformatics Italian Society, Bari, 14-16 Aprile 2010
Ceci M, Loglisci C, Salvemini E, Grillo G, DElia D, Malerba D
Mining spatial association rules of multiple co-occurring motifs to discover cis-regulatory modules
(2010) BITS-2010 - VII Annual Meeting of the Bioinformatics Italian Society, Bari, 14-16 Aprile 2010
BITS 2010 - VII Annual Meeting of the Bioinformatics Italian Society, Bioinformatics and Computational Biology for Life Sciences
(2010)
EMBnet.journal - Bioinformatics in Action
(2010)
Licciulli F, Consiglio A, De Caro G, DElia D, Grillo G, Liuni S, Picardi E, Pesole G
A BIOINFORMATICS WORKFLOW FOR THE ANALYSIS OF NONCODING RNAs FROM DATA GENERATED BY DEEP-SEQUENCING
(2010) Next Generation Sequencing Workshop - Second Edition, Bari
Picardi E, Pesole G, D'Elia D
Preface to Abstract Book - Next Generation Sequencing Workshop
(2010) in , 2010
Attimonelli M, D'Elia D, Pesole G
Preface to Abstract Book - BITS 2010, VII Annual Meeting of the Bioinformatics Italian Society
(2010) in , 2010
1 A. Turi, 1C. loglisci, 1 E. Salvemini, G. Grillo, e D. DElia
Strumenti Bioinformatici per interpretare fenomeni Biologici
(2009)
Antonio Turi1, Corrado Loglisci1, Eliana Salvemini1, Giorgio Grillo2, Donato Malerba1 and Domenica D'Elia2*
UTRminer
(2009)
Corrado Loglisci1, Eliana Salvemini1, Antonio Turi1, Giorgio Grillo2, Domenica D'Elia2, Donato Malerba1
Mining Frequent Pattern of Biological Spaced Motifs.
(2009) Seventeenth Italian Symposium on Advanced Database Systems - SEBD 2009, Camogli (Genova), Italy, 21 - 24 June 2009
Eliana Salvemini, Michelangelo Ceci, Domenica D'Elia, Marco Didonna, Anna Paola Carrieri
Mining Association Rules from Sequences of Spaced Motifs
(2009) - Logic-based approaches in Bioinformatics Workshop - Satellite workshop of the AI*IA 2009: International Conference of the Italian Association for Artificial Intelligence, Reggio Emilia, 12/12/2009
Maria Mirto, Italo Epicoco, Sandro Fiore, Massimo Cafaro Alessandro Negro, Daniele Tartarini, Daniele Lezzi, Osvaldo Marra, Antonio Turi, Alessandra Ferramosca, Vincenzo Zara, Giovanni Aloisio?,Giacinto Donvito, Luciana Carota, Guido Cuscela, Giorgio Pietro Maggi, Giuseppe La Rocca, Mirco Mazzucato, Salvatore My, Giovanna Selvaggi,Gaetano Scioscia, Pietro Leo, Luigi Di Pace Graziano Pappada, Vincenzo Quinto, Margherita Berardi,Francesco Falciano , Andrew Emerson ,Elda Rossi,Giovanni Lavorgna, Andrea Vanni ,Lisa Bartoli, Pietro Di Lena, Piero Fariselli, Raffaele Fronza, Luciano Margara, Ludovica Montanucci, Pier Luigi Martelli, Ivan Rossi, Marco Vassura, and Rita Casadio,Tiziana Castrignanò ,Domenica D'Elia, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Andreas Gisel, Monica Santamaria, Saverio Vicario, Cecilia Saccone
,Anna Anselmo, David Horner, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Viviana Piccolo, Matteo Re, Federico Zambelli, Graziano Pesole
The LIBI Grid Platform for Bioinformatics
Maria Mirto, Italo Epicoco, Sandro Fiore, Massimo Cafaro Alessandro Negro, Daniele Tartarini, Daniele Lezzi, Osvaldo Marra, Antonio Turi, Alessandra Ferramosca, Vincenzo Zara, Giovanni Aloisio?,Giacinto Donvito, Luciana Carota, Guido Cuscela, Giorgio Pietro Maggi, Giuseppe La Rocca, Mirco Mazzucato, Salvatore My, Giovanna Selvaggi,Gaetano Scioscia, Pietro Leo, Luigi Di Pace Graziano Pappada, Vincenzo Quinto, Margherita Berardi,Francesco Falciano , Andrew Emerson ,Elda Rossi,Giovanni Lavorgna, Andrea Vanni ,Lisa Bartoli, Pietro Di Lena, Piero Fariselli, Raffaele Fronza, Luciano Margara, Ludovica Montanucci, Pier Luigi Martelli, Ivan Rossi, Marco Vassura, and Rita Casadio,Tiziana Castrignanò ,Domenica D'Elia, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Andreas Gisel, Monica Santamaria, Saverio Vicario, Cecilia Saccone
(2009) in , 2009
Turi Antonio*[1], Loglisci Corrado[1], Salvemini Eliana[1], Grillo Giorgio[2], Malerba Donato[1], D'Elia Domenica[2]
Computational annotation of UTR cis-regulatory modules through frequent pattern mining
(2008) in Embnet news (Print)
Eriksson NE 1, DElia D 2, Bongcam-Rudloff E 3
EMBnet, a brief history and a current picture
(2008) in Embnet news (Print)
Giorgio P. Maggi 1, Domenica DElia 2, Andreas Gisel 2, Giacinto Donvito 1, Guido Cuscela 1, Giuseppe La Rocca 3
Tutorial on Grid Computing. Satellite event of the EMBnet Conference 2008
(2008)
D'Elia Domenica , Loglisci Corrado, Salvemini Eliana, Turi Antonio, Malerba Donato
Higher Order Mining of Biological Motifs
(2008) Artificial Intelligence and Linfe Science (AI*IA) Conference, Cagliari - Italia, 11-13 Settembre 2008
D'Elia Domenica
EMBnet yesterday, today, tomorrow
(2008) Leading Applications and Technologies in Bioinformatics, Martina Franca (TA), 18-20 September, 2008
Santamaria Monica*[1], Vicario Saverio[1], Domenica D'Elia[1], Pappadà Graziano[2], Scioscia Gaetano[3], Vicario Saverio[1], Scazzocchio Claudio[4], Saccone Cecilia[5]
TOWARDS BARCODE MARKERS IN FUNGI: AN INTRON MAP OF ASCOMYCOTA MITOCHONDRIA
(2008) EMBnet Conference 2008, 20th Anniversary Celebration 'Leading Applications and Technologies in Bioinformatics', Martina Franca (TA), 18-20 September 2018
Domenica D'Elia
The MitoRes database
(2007) in Embnet news (Print)
DElia Domenica , Germinario Lucrezia , Grillo Giorgio
Analysis of UTRs from nuclear-encoded mRNA targeting the mitochondrion in Metazoa reveals new insights about molecular mechanisms controlling mitochondrial biogenesis
(2007) BITS2007 Meeting, Napoli
Domenica D'Elia
News from EMBnet
(2007) BITS2007 Meeting, Napoli
Domenica D'Elia a; Domenico Catalano a; Flavio Licciulli a; Antonio Turi a; Gaetano Tripoli b; Damiano Porcelli b; Cecilia Saccone a,c; Corrado Caggese b;
The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae
(2006) in Mitochondrion (Amsterdam. Print)
Domenico Catalano 1; Flavio Licciulli 1; Antonio Turi 1; Giorgio Grillo 1;
Cecilia Saccone 1,2; and Domenica D'Elia 1;
MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa
Domenico Catalano 1; Flavio Licciulli 1; Antonio Turi 1; Giorgio Grillo 1;
(2006) in BMC bioinformatics
Tripoli, G., D'Elia, D., Barsanti, P. Caggese, C.
Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae
(2005) in Genome biology (Online)
Anna De Grassi a, Corrado Caggese b, Domenica D'Elia a, Cecilia Lanave a,
Graziano Pesole c, Cecilia Saccone a,d,*
Evolution of nuclearly encoded mitochondrial genes in Metazoa.
Anna De Grassi a, Corrado Caggese b, Domenica D'Elia a, Cecilia Lanave a,
(2005) in Gene (Amst.)
Anna De Grassi a, Corrado Caggese b, Domenica D'Elia a, Cecilia Lanave a, Graziano Pesole c, Cecilia Saccone a,d,*
Evolution of nuclearly encoded mitochondrial genes in Metazoa
(2005) in Gene (Amst.)
D. D'Elia, A. Turi, D. Catalano, F. Licciulli, G. Tripoli, D. Porcelli, C. Caggese
MitoDrome2: a database of OXPHOS nuclear genes in Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae
(2005) BITS 2005, Milano
Domenico Catalano, Vito Flavio Licciulli, Antonio Turi, Giorgio Grillo, Cecilia Saccone, Domenica D'Elia
MitoRes: a comprehensive resource of nuclear genes encoding for mitochondrial proteins in metazoa
(2005) 4th European Conference on Computational Biology 2005 (ECCB/05), Madrid
D. Catalano, F. Licciulli, A. Turi, G. Grillo and D. D'Elia
MitoRes: a bio-sequences resource of nuclearly encoded mitochondrial genes and products in metazoa
(2005) BITS 2005, Milano
F. Licciulli, D. Catalano, A. Turi, G. Grillo, G. Tripoli, D. Porcelli, C. Caggese, C. Saccone and D. D'Elia
MitoRes and MitoDrome2: two comprehensive resources of nuclear genes encoding
(2005) Workshop on Database Issues in Biological Databases (DBiBD) in conjunction with the Tenth International Conference on Database Theory (ICDT), Edinburgh
D. Catalano, A. Turi, F. Licciulli, G. Grillo, C. Saccone and D. D'Elia
MitoNuc: a specialized collection of nuclear metazoan genes encoding mitochondrial protein
(2004)
D. D'Elia, A. Turi, D. Catalano, F. Licciulli, G. Tripoli, D. Porcelli, C. Saccone, C. Caggese
MitoDrome: a content manager system to manage and retrieve data on nuclear encoded mitochondrial proteins of D. melanogaster, D. pseudoobscura and A. gambiae
(2004)
D. Catalano, F. Licciulli, G. Grillo, S. Liuni, G. Pesole, C. Saccone and D. D'Elia
MitoNuc: a database of nuclear genes encoding for mitochondrial proteins
(2004) Convegno BITS2004 - I° Convegno Società Italiana di Bioinformatica, Padova, 2004
D'Elia D., Catalano D., Licciulli F., Turi A., Tripoli G., Caggese C.
MitoDrome: una banca dati di geni nucleari di Drosophila M. che codificano per proteine a localizzazione mitocondriale
(2003)
Catalano D., Licciulli F., Grillo G., Turi A., D'Elia D.
MitoNuc: una banca dati di geni nucleari che codificano per proteine a localizzazione mitocondriale
(2003)
D'Elia D., Leo P., Scioscia G., Lopriore P., Delle Foglie G., Licciulli F., Millot M., Weighardt F., Bonfini L. , Lorberth R. , Heinze P., Van den Eede G. , Attimonelli M., Buhk H.-J.
GMOs MolReg Database: una banca dati integrata a programmi di analisi di biosequenze per la catalogazione di Organismi Geneticamente Modificati a supporto delle attività dellEuropean Network of Genetic Modified Organism (GMO) Laboratories (ENGL).
(2003)
D. D'Elia1, P. Leo3, G. Scioscia3, P. Lopriore3, G. Delle Foglie1, F. Licciulli1, M. Millot4, F. Weighardt4, L. Bonfini4, R. Lorberth5, P. Heinze4, G. Van den Eede4, M. Attimonelli2, H.-J. Buhk5
An example of an Integrated Bioinformatic System to support detection/quantification of GMOs
(2003) European Conference on Computational Biology (ECCB 2003), Parigi, 27-30 September 2003
D'Elia D., Leo P., Scioscia G., Lopriore P., Delle Foglie G., Licciulli F., Millot M., Weighardt F., Bonfini L. , Lorberth R. , Heinze P., Van den Eede G. , Attimonelli M., Buhk H.-J.
An Integrated Bioinformatics System to support sequences analysis, detection and quantification of Genetic Modified Organisms (GMOs)
(2003) 48° Congresso Nazionale SIB, Ferrara
D'Elia D. 1, Leo P. 4, Scioscia G. 4, Lopriore P. 4, Delle Foglie G. 1, Licciulli F. 1, Millot M. 2, Weighardt F. 2, Bonfini L. 2 , Lorberth R. 3, Heinze P. 2, Van den Eede G. 2 , Attimonelli M. 5, Buhk H.-J. 3
Il GMOs MolReg: una Piattaforma Bioinformatica Integrata a supporto della individuazione, quantificazione e analisi di Organismi Geneticamente Modificati (OGM)
(2003)
Elisabetta Sbisa', Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Apollonia Tullo, Anna Maria D'Erchia, Andreas Gisel, Domenico Catalano, Graziano Pesole, Aurelio Reyes, D'Elia Domenica, Lanave Cecilia
Microchip contenente geni target umani della famiglia genica dell'oncosoppressore p53
(2003)
D'Elia D.
FINAL REPORT OF PROJECT CONTRACT N° 17356-2000-12 F2SC ISP IT: Development of a GMO Register consisting of a database and accompanying bioinformatics tools designed for detection and monitoring purposes in support to the activities of the European Network of GMO Laboratories (ENGL)
(2003)
M. Attimonelli*, N. Altamura1, R. Benne2, A. Brennicke3, J. M. Cooper4, D. D'Elia5, A. de Montalvo6, B. de Pinto1, M. De Robertis, P. Golik7, V. Knoop3, C. Lanave1, J. Lazowska7, F. Licciulli5, B. S. Malladi8, F. Memeo, M. Monnerot7, R. Pasimeni, S. Pilbout7, A. H. V. Schapira9, P. Sloof2 and, C. Saccone
MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status.
(2000) in Nucleic acids research (Online)
D. Catalano, F. Licciulli, D. D'Elia and M. Attimonelli1
Update of KEYnet: a gene and protein names database for biosequences functional organisation
(2000) in Nucleic acids research
M. Attimonelli1,*, N. Altamura2, R. Benne3, C. Boyen4, A. Brennicke5, A. Carone1,
J. M. Cooper6, D. D'Elia7, A. de Montalvo8, B. de Pinto2, M. De Robertis1, P. Golik9,
J. M. Grienenberger10, V. Knoop5, C. Lanave2, J. Lazowska9, A. Lemagnen9,
B. S. Malladi11, F. Memeo1, M. Monnerot9, S. Pilbout9, A. H. V. Schapira6,12, P. Sloof3,
P. Slonimski9, K. Stevens6,12 and C. Saccone1
MitBASE: a comprehensive and integrated mitochondrial DNA database.
M. Attimonelli1,*, N. Altamura2, R. Benne3, C. Boyen4, A. Brennicke5, A. Carone1,
J. M. Cooper6, D. D'Elia7, A. de Montalvo8, B. de Pinto2, M. De Robertis1, P. Golik9,
J. M. Grienenberger10, V. Knoop5, C. Lanave2, J. Lazowska9, A. Lemagnen9,
B. S. Malladi11, F. Memeo1, M. Monnerot9, S. Pilbout9, A. H. V. Schapira6,12, P. Sloof3,
(1999) in Nucleic acids research
M. Attimonelli 1,*, J. M. Cooper2,D. D'Elia3, A. de Montalvo4, M. De Robertis5, H. Lehväslaiho6 ,S. B. Malladi6, F.Memeo1, K. Stevens2,7, A. H. V. Schapira2,7 and C. Saccone1
Updata of the Human MitBASE database
(1999) in Nucleic acids research (Online)
F. Licciulli 2; D. Catalano 2 ; D. D'Elia2 ; V. Lorusso 3; M. Attimonelli 1;
KEYnet: a keywords database for biosequences functional organization
(1999)
M. Attimonelli*, N. Altamura1, R. Benne2, A. Brennicke3, J. M. Cooper4, D. D'Elia5, A. de Montalvo6, B. de Pinto1, M. De Robertis, P. Golik7, V. Knoop3, C. Lanave1, J. Lazowska7, F. Licciulli5, B. S. Malladi8, F. Memeo, M. Monnerot7, R. Pasimeni, S. Pilbout7, A. H. V. Schapira9, P. Sloof2 and, C. Saccone
MitBASE: a comprehensive and integrated mitochondrial DNA database
(1998)
Cingolani G, Capaccio L, D'Elia D, Gadaleta G.
In organello footprinting analysis of rat mitochondrial DNA: protein interaction upstream of the Ori-L
(1997) in Biochemical and biophysical research communications (Print)
Gadaleta G, D'Elia D, Capaccio L, Saccone C, Pepe G.
Isolation of a 25-kDa Binding Protein to a curved DNA Upstream the Origin of the L Strand Replication in the Rat Mitochondrial Genome
(1996) in Journal of biological chemistry (Online)
Gadaleta G, D'Elia D, Saccone C, Pepe G.
A 67-kDa protein binding to the curved DNA in the main regulatory region of the mitochondrial genome
(1995) in Gene (Amst.)
G. Gadaleta, D. D'elia, A. Tullo, E. Sbisa', C. Saccone And G. Pepe
Caratterizzazione di proteine che legano il DNA mitocondriale di ratto
(1993) in Italian Journal of Biochemistry
Gadaleta G., D'Elia D., Pepe G., Saccone C.
A regulatory protein of mitochondrial expression purified by affinity chromatography with synthetic oligonucleotides
(1993) in Minerva biotecnologica (Testo stamp.)