The information published in this page are entirely managed by GIORGIO GRILLO who is completely responsible for it.
Giorgio De Caro 1, Arianna Consiglio 1, Domenica D'Elia 1?, Andreas Gisel 1,2, Giorgio Grillo 1, Sabino Liuni 1, Angelica Tulipano 1, Flavio Licciulli 1
The NonCode aReNA DB: a non-redundant and integrated collection of non- codingRNAs
(2015) in EMBnet journal
Giulietti, Matteo; Grillo, Giorgio; Liuni, Sabino; Pesole, Graziano
A guideline for the annotation of UTR regulatory elements in the UTRsite collection
(2015) in Methods in molecular biology (Clifton N.J.)
Arianna Consiglio, Corrado Mencar, Giorgio Grillo and Liuni Sabino
Managing NGS differential expression uncertainty with fuzzy sets
(2015) International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics,, Napoli, 10-12/9/2015
Giorgio De Caro1, Arianna Consiglio1, Domenica D'Elia1, Andreas Gisel1, Giorgio Grillo1, Sabino Liuni1, Angelica Tulipano1 and Flavio Licciulli1
NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs
(2015) NETTAB 2015 & Integrative Bioinformatics 2015 Joint Symposium, Bari, 14-16 October 2015
Giorgio De Caro1, Arianna Consiglio1, Domenica D'Elia1, Andreas Gisel1, Giorgio Grillo1, Sabino Liuni1, Angelica Tulipano1 and Flavio Licciulli1
NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs
(2015) BITS 2015 Twelfth Annual Meeting of the Bioinformatics Italian Society, Milan, 3-5 Giugno 2015
Giorgio De Caro 1, Arianna Consiglio 1, Domenica D'Elia 1 ?, Andreas Gisel 1,2, Giorgio Grillo 1, Sabino Liuni 1, Angelica Tulipano 1, Flavio Licciulli 1
The NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs
(2015) COST Conference "Next Generation Sequencing: a look into the future", Bratislava, Slovakia, 16-17 March 2015
De Caro G1*, Tulipano A1*, Consiglio A1, D'Elia D1, Grillo G1, Marinaro M2, Liuni S1, Licciulli F1 and Gisel A1
*Equal contributors
nc-aReNA: an integrated bioinformatics platform for non-coding RNA-seq data classification and annotation
De Caro G1*, Tulipano A1*, Consiglio A1, D'Elia D1, Grillo G1, Marinaro M2, Liuni S1, Licciulli F1 and Gisel A1
(2014) NGS and non-coding RNA data analysis workshop II (2014), Plovdiv, Bulgaria, 15-16 May 2014
B. Fosso1, M. Santamaria2, A. Consiglio3, G. De Caro3, G. Grillo3, F. Licciuli3, S. Liuni3, M. Marzano2, G. Pesole1
ITSoneDB: a specialized ITS1 database for amplicon-based metagenomic characterization of environmental fungal communities
(2012) in EMBnet journal
Paolo Pannarale 3; Domenico Catalano 2; Giorgio De Caro 1; Giorgio Grillo 1; Pietro Leo 3; Graziano Pappadà 4;Francesco Rubino 3; Gaetano Scioscia 3; Flavio Licciulli 1;
GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database
(2012) in BMC bioinformatics
Arianna Consiglio 1, Massimo Carella 2, Giorgio De Caro 1, Gianfranco Delle Foglie 1, Candida Giovannelli 3, Giorgio Grillo 1, Massimo Ianigro 3, Flavio Licciulli 1, Orazio Palumbo 2, Ada Piepoli 4, Elena Ranieri 5, Sabino Liuni 1
BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments
(2012) in BMC bioinformatics
Monica Santamaria 1, Bruno Fosso 2, Arianna Consiglio 3, Giorgio De Caro 3, Giorgio Grillo 3, Flavio Licciulli 3, Sabino Liuni 3, Marinella Marzano 1, Daniel Alonso-Alemany 4, Gabriel Valiente 4 and Graziano Pesole 1,2
Reference databases for taxonomic assignment in metagenomics
(2012) in Briefings in bioinformatics
Monica Santamaria 1, Bruno Fosso 2, Arianna Consiglio 3, Giorgio De Caro 3, Giorgio Grillo 3, Flavio Licciulli 3, Sabino Liuni 3, Marinella Marzano 1, Daniel Alonso-Alemany 4, Gabriel Valiente 4 and Graziano Pesole 1,2
ITSoneDB
(2012)
Consiglio Arianna, Rizzi Ermanno, De Caro Giorgio, Gisel Andreas, Grillo Giorgio, Licciulli Flavio, Pelucchi Paride, Tria Valeria, Rolland Reinbold, De Bellis Gianluca , Zucchi Ileana, Liuni Sabino, Tulipano Angelica
A BIOINFORMATIC APPROACH FOR NGS DATA TO ANALIZE AND VISUALIZE CHROMOSOMAL FUSION EVENTS IN HUMAN BREAST CANCER.
(2012) NGS12 WORKSHOP, TRENTO, June 2012
Consiglio, Arianna; Grillo, Giorgio; Licciulli, Flavio; Ceci, Luigi R.; Liuni, Sabino; Losito, Nicola; Volpicella, Mariateresa; Gallerani, Raffaele; De Leo, Francesca
PlantPIs - An Interactive Web Resource on Plant Protease Inhibitors
(2011) in Current protein and peptide science (Print)
Consiglio A 1, Grillo G 1, Licciulli F 1, Ceci LR 2, Liuni S 1, Losito N 1, Volpicella M 2, Gallerani R 3, De Leo F 2.
PlantPIsDB
(2011)
Domenica D'Elia1, Marina Mangiulli2, Anna Maria Paluscio1, Caterina Manzari1, Mariano Francesco Caratozzolo1, Flaviana Marzano3, Anna Maria D'Erchia2, Flavio Mignone4, Flavio Licciulli1, Giorgio Grillo1, Sabino Liuni1, Graziano Pesole2,5, Elisabetta Sbisà1, Apollonia Tullo1
Identification of new p53 regulatory networks through NGS data analysis
(2011) Next Generation Sequencing Workshop, Third Edition, Bari, 12/10/2011, 14/10/2011
Pannarale P 1; Scioscia G. 1; Rubino F. 1; Leo P. 1; Pappadà G. 2; D'Elia D. 3; Grillo G. 3; Vicario S. 3; De Caro G. 3; Gisel A. 3; Mulè G. 4; Susca A. 4; Catalano D. 5; Licciulli F. 3;
Social Database for Biodiversity
(2010) bITS 2010 Bioinformatics and Compiutational Biology for Life Sciences, Bari, 14/04/2010
Domenico Catalano; Licciulli Flavio; Giorgio Grillo;
COSRaptor: a software for large-scale COS identification and polymorphic microsatellite in several plant species and cultivar
(2010) BITS 2010 Bioinformatics and Compiutational Biology for Life Sciences, Bari, 14/04/2010
Pannarale P, Scioscia G, Rubino F, Leo P, Pappadà G, DElia D, Grillo G, Vicario S, De Caro G, Gisel A, Mulè G, Susca 4, Catalano D, Licciulli F
Social Database for Biodiversity
(2010) BITS-2010 - VII Annual Meeting of the Bioinformatics Italian Society, Bari, 14-16 Aprile 2010
Grillo G., Licciulli F., Catalano D.
COSRaptor: a software for large-scale COS identification and polymorphic microsatellite in several plant species and cultivars
(2010)
Giorgio Grillo 1; Antonio Turi 2; Flavio Licciulli 1; Flavio Mignone 3; Sabino Liuni 1; Sandro Banfi 4; Vincenzo Alessandro Gennarino 4; David S. Horner 5; Giulio Pavesi 5; Ernesto Picardi 2; Graziano Pesole 1,2
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
(2010) in Nucleic acids research
Pannarale P; Scioscia G; Rubino F; Leo P; Pappadà G; D'Elia D; Grillo G; Vicario S; De Caro G; Gisel A; Mulè G; Susca A; Catalano D; Licciulli F
Social Database for Biodiversity
(2010)
Ceci M, Loglisci C, Salvemini E, Grillo G, DElia D, Malerba D
Mining spatial association rules of multiple co-occurring motifs to discover cis-regulatory modules
(2010) BITS-2010 - VII Annual Meeting of the Bioinformatics Italian Society, Bari, 14-16 Aprile 2010
Licciulli F1, Caratozzolo FM2, Cornacchia S2, D'Elia D1, D'Erchia AM1, Fosso B2, Grillo G1, Liuni S1, Mangiulli M2, Manzari C2, Mignone F3, Paluscio AM1, Picardi E2, Sbisà1, Tullo A1, Pesole G2,4
A bioinformatics workflow for the analysis of transcriptome data generated by deep-sequencing
(2010) BITS-2010 - VII Annual Meeting of the Bioinformatics Italian Society, Bari, 14-16 Aprile 2010
Licciulli F, Consiglio A, De Caro G, DElia D, Grillo G, Liuni S, Picardi E, Pesole G
A BIOINFORMATICS WORKFLOW FOR THE ANALYSIS OF NONCODING RNAs FROM DATA GENERATED BY DEEP-SEQUENCING
(2010) Next Generation Sequencing Workshop - Second Edition, Bari
1 A. Turi, 1C. loglisci, 1 E. Salvemini, G. Grillo, e D. DElia
Strumenti Bioinformatici per interpretare fenomeni Biologici
(2009)
Antonio Turi 1; Corrado Loglisci 1; Eliana Salvemini 1; Giorgio Grillo 2; Donato Malerba 1; Domenica D'Elia 2
Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining
(2009) in BMC bioinformatics
Antonio Turi1, Corrado Loglisci1, Eliana Salvemini1, Giorgio Grillo2, Donato Malerba1 and Domenica D'Elia2*
UTRminer
(2009)
Corrado Loglisci1, Eliana Salvemini1, Antonio Turi1, Giorgio Grillo2, Domenica D'Elia2, Donato Malerba1
Mining Frequent Pattern of Biological Spaced Motifs.
(2009) Seventeenth Italian Symposium on Advanced Database Systems - SEBD 2009, Camogli (Genova), Italy, 21 - 24 June 2009
Maria Mirto, Italo Epicoco, Sandro Fiore, Massimo Cafaro Alessandro Negro, Daniele Tartarini, Daniele Lezzi, Osvaldo Marra, Antonio Turi, Alessandra Ferramosca, Vincenzo Zara, Giovanni Aloisio?,Giacinto Donvito, Luciana Carota, Guido Cuscela, Giorgio Pietro Maggi, Giuseppe La Rocca, Mirco Mazzucato, Salvatore My, Giovanna Selvaggi,Gaetano Scioscia, Pietro Leo, Luigi Di Pace Graziano Pappada, Vincenzo Quinto, Margherita Berardi,Francesco Falciano , Andrew Emerson ,Elda Rossi,Giovanni Lavorgna, Andrea Vanni ,Lisa Bartoli, Pietro Di Lena, Piero Fariselli, Raffaele Fronza, Luciano Margara, Ludovica Montanucci, Pier Luigi Martelli, Ivan Rossi, Marco Vassura, and Rita Casadio,Tiziana Castrignanò ,Domenica D'Elia, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Andreas Gisel, Monica Santamaria, Saverio Vicario, Cecilia Saccone
,Anna Anselmo, David Horner, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Viviana Piccolo, Matteo Re, Federico Zambelli, Graziano Pesole
The LIBI Grid Platform for Bioinformatics
Maria Mirto, Italo Epicoco, Sandro Fiore, Massimo Cafaro Alessandro Negro, Daniele Tartarini, Daniele Lezzi, Osvaldo Marra, Antonio Turi, Alessandra Ferramosca, Vincenzo Zara, Giovanni Aloisio?,Giacinto Donvito, Luciana Carota, Guido Cuscela, Giorgio Pietro Maggi, Giuseppe La Rocca, Mirco Mazzucato, Salvatore My, Giovanna Selvaggi,Gaetano Scioscia, Pietro Leo, Luigi Di Pace Graziano Pappada, Vincenzo Quinto, Margherita Berardi,Francesco Falciano , Andrew Emerson ,Elda Rossi,Giovanni Lavorgna, Andrea Vanni ,Lisa Bartoli, Pietro Di Lena, Piero Fariselli, Raffaele Fronza, Luciano Margara, Ludovica Montanucci, Pier Luigi Martelli, Ivan Rossi, Marco Vassura, and Rita Casadio,Tiziana Castrignanò ,Domenica D'Elia, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Andreas Gisel, Monica Santamaria, Saverio Vicario, Cecilia Saccone
(2009) in , 2009
Turi Antonio*[1], Loglisci Corrado[1], Salvemini Eliana[1], Grillo Giorgio[2], Malerba Donato[1], D'Elia Domenica[2]
Computational annotation of UTR cis-regulatory modules through frequent pattern mining
(2008) in Embnet news (Print)
Flavio Mignone 1; Anna Anselmo 2; Giacinto Donvito 3; Giorgio P Maggi 3; Giorgio Grillo 4; Graziano Pesole 4,5
Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes
(2008) in BMC genomics
D'Elia Domenica , Loglisci Corrado, Salvemini Eliana, Turi Antonio, Malerba Donato
Higher Order Mining of Biological Motifs
(2008) Artificial Intelligence and Linfe Science (AI*IA) Conference, Cagliari - Italia, 11-13 Settembre 2008
DOnorio De Meo P., Carrabino D., Sanna N., Castrignano T.,Grillo G., Licciulli F., Liuni S., Re M., Mignone F., Pesole G.
A High Performance grid-web service framework for the identification of conserved sequence tags
(2007) in Future generation computer systems
Sbisà E; Catalano D; Grillo G; Licciulli F; Turi A; Liuni S; Pesole G; De Grassi A; Caratozzolo MF; D'Erchia AM; Navarro B; Tullo A; Saccone C; Gisel A.
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.
(2007) in BMC bioinformatics
Elisabetta Sbisà 1*; Domenico Catalano 1; Giorgio Grillo 1; Flavio Licciulli 1; Antonio Turi 1; Sabino Liuni 1; Graziano Pesole 1,2; Anna De Grassi 1,2; Mariano F Caratozzolo1,2; Anna M D'Erchia 1,2; Beatriz Navarro 1; Apollonia Tullo 1; Cecilia Saccone 1,2; Andreas Gisel 1;
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.
(2007) in BMC bioinformatics
Elisabetta Sbisà 1*; Domenico Catalano 1; Giorgio Grillo 1; Flavio Licciulli 1; Antonio Turi 1; Sabino Liuni 1; Graziano Pesole 1,2; Anna De Grassi 1,2; Mariano F Caratozzolo1,2; Anna M D'Erchia 1,2; Beatriz Navarro 1; Apollonia Tullo 1; Cecilia Saccone 1,2; Andreas Gisel 1;
p53FamTaG database
(2007)
NAVARRO B, DERCHIA A M, TULLO A, CARATOZZOLO M F, CAVONE D, DE GRASSI A, CATALANO D, GRILLO G, LICCIULLI F, TURI A, LIUNI S, GISEL A, PESOLE G, SACCONE C, SBISÀ E
p53FamTaG database: a public resource which integrates genome-wide in silico and experimental analyses of p53 family direct target genes
(2007) 3rd International p63/p73 workshop, Roma
DElia Domenica , Germinario Lucrezia , Grillo Giorgio
Analysis of UTRs from nuclear-encoded mRNA targeting the mitochondrion in Metazoa reveals new insights about molecular mechanisms controlling mitochondrial biogenesis
(2007) BITS2007 Meeting, Napoli
Castrignano T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags
(2006) in Bioinformatics (Oxf., Print)
Domenico Catalano 1; Flavio Licciulli 1; Antonio Turi 1; Giorgio Grillo 1;
Cecilia Saccone 1,2; and Domenica D'Elia 1;
MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa
Domenico Catalano 1; Flavio Licciulli 1; Antonio Turi 1; Giorgio Grillo 1;
(2006) in BMC bioinformatics
Re M, Mignone F, Iacono M, Grillo G, Liuni S, Pesole G.
A new strategy to identify novel genes and gene isoforms: Analysis of human chromosomes 15, 21 and 22
(2006) in Gene (Amst.)
Catalano Domenico, Licciulli Flavio, Turi Antonio, Grillo Giorgio, Saccone Cecilia, D'Elia Domenica
MitoRes: A bio-sequences resource for mitochondria-related genes, transcripts and proteins
(2006)
Mignone F.; Grillo G.; Licciulli F.; Iacono M.; Liuni S.; Kersey P.J.; Duarte J.; Saccone C.; Pesole G.
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
(2005) in Nucleic acids research
D. Catalano, F. Licciulli, A. Turi, G. Grillo and D. D'Elia
MitoRes: a bio-sequences resource of nuclearly encoded mitochondrial genes and products in metazoa
(2005) BITS 2005, Milano
Domenico Catalano, Vito Flavio Licciulli, Antonio Turi, Giorgio Grillo, Cecilia Saccone, Domenica D'Elia
MitoRes: a comprehensive resource of nuclear genes encoding for mitochondrial proteins in metazoa
(2005) 4th European Conference on Computational Biology 2005 (ECCB/05), Madrid
F. Licciulli, D. Catalano, A. Turi, G. Grillo, G. Tripoli, D. Porcelli, C. Caggese, C. Saccone and D. D'Elia
MitoRes and MitoDrome2: two comprehensive resources of nuclear genes encoding
(2005) Workshop on Database Issues in Biological Databases (DBiBD) in conjunction with the Tenth International Conference on Database Theory (ICDT), Edinburgh
D. Catalano, A. Turi, F. Licciulli, G. Grillo, C. Saccone and D. D'Elia
MitoNuc: a specialized collection of nuclear metazoan genes encoding mitochondrial protein
(2004)
Gisel A, Panetta M, Grillo G, Licciulli VF, Liuni S, Saccone C, Pesole G
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.
(2004) in Bioinformatics (Oxf., Print)
Tiziana Castrignanò 1; Alessandro Canali 1; Giorgio Grillo 2; Sabino Liuni 2; Flavio Mignone 3; Graziano Pesole 3
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species geneome comparison
(2004) in Nucleic acids research
Gisel, A.; Panetta, M.; Grillo, G.; Licciulli, VF.; Liuni, S.; Saccone, C.; Pesole, G.
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions
(2004) in Bioinformatics (Oxf., Print)
D. Catalano, F. Licciulli, G. Grillo, S. Liuni, G. Pesole, C. Saccone and D. D'Elia
MitoNuc: a database of nuclear genes encoding for mitochondrial proteins
(2004) Convegno BITS2004 - I° Convegno Società Italiana di Bioinformatica, Padova, 2004
Mignone F., Grillo G., Liuni S., Pesole G.
Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis
(2003) in Nucleic acids research
Grillo G., Licciulli F., Liuni S., Sbisà E., Pesole G.
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences
(2003) in Nucleic acids research
Catalano D., Licciulli F., Grillo G., Turi A., D'Elia D.
MitoNuc: una banca dati di geni nucleari che codificano per proteine a localizzazione mitocondriale
(2003)
Elisabetta Sbisa', Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Apollonia Tullo, Anna Maria D'Erchia, Andreas Gisel, Domenico Catalano, Graziano Pesole, Aurelio Reyes, D'Elia Domenica, Lanave Cecilia
Microchip contenente geni target umani della famiglia genica dell'oncosoppressore p53
(2003)
Pesole G., Liuni S., Grillo G., Licciulli F., Mignone F., Gissi C., Saccone C.
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mrnas. Update 2002
(2002) in Nucleic acids research
Attimonelli M. , Catalano D. , Gissi C. , Grillo G. , Licciulli F. , Liuni S. , Santamaria M. , Pesole G. , Saccone C.
Mitonuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002
(2002) in Nucleic acids research
Liuni Sabino, Licciulli Flavio, Giorgio Grillo,Graziano Pesole
Banca Dati UTRdb e collezione UTRSite
(2002)
Pesole G., Mignone F., Gissi C., Grillo G., Licciulli F., Liuni S.
Structural and functional features of eukaryotic mRNA untranslated regions
(2001) in Gene (Amst.)
Pesole G, Grillo G, Larizza A, Liuni S.
The untranslated regions of eukaryotic mRNAs: structure, function, evolution and bioinformatic tools for their analysis.
(2000) in Briefings in bioinformatics
Pesole, G.; Gissi, C.; Grillo, G.; Licciulli, F.; Liuni, S; Saccone, C
Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs
(2000) in Gene (Amst.)
Pesole, G.; Liuni, S.; Grillo, G.; Licciulli, F.; Larizza, A.; Makalowski, W.; Saccone, C.
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5 ' and 3 ' untranslated regions of eukaryotic mRNAs
(2000) in Nucleic acids research
Pesole, G.; Liuni, S; Grillo, G.; Ippedico, M.; Larizza, A.; Makalowski, W.; Saccone, C.
UTRdb: a specialized database of 5 ' and 3 ' untranslated regions of eukaryotic mRNAs
(1999) in Nucleic acids research
Pesole, G.; Liuni, S.; Grillo, G.; Belichard, P.; Trenkle, T.; Welsh, J.; McClelland, M.
GeneUp: A program to select short PCR primer pairs that occur in multiple members of sequence lists
(1999) in BioTechniques
Pesole, G.; Liuni, S.; Grillo, G.; Saccone, C.
UTRdb: a specialized database of 5 '- and 3 '-untranslated regions of eukaryotic mRNAs
(1998) in Nucleic acids research
Pesole G, Liuni S, Grillo G, Saccone C
Structural and compositional features of untranslated regions of eukaryotic mRNAs
(1997) in Gene (Amst.)
Pesole, G.; Grillo, G.; Liuni, S.
Databases of mRNA untranslated regions for metazoa
(1996) in Computers & chemistry
Grillo, G.; Attimonelli, M.; Liuni, S.; Pesole, G.
CLEANUP: A fast computer program for removing redundancies from nucleotide sequence databases
(1996) in Computer applications in the biosciences (Print)
