The information published in this page are entirely managed by IVAN MERELLI who is completely responsible for it.
Ivan Merelli is currently staff scientist at the Institute for Biomedical Technologies (ITB) of the Italian National Research Council (CNR). In December 2003 he received a Master's Degree in Biomedical Engineering from the Politecnico di Milano and in February 2009 a PhD in Computer Science from the university of Milano - Bicocca. His research activities concern the bioinformatic analysis and integration of multi-omic datasets (bulk RNA-seq, scRNA-seq, bulk ATAC-seq, scATAC-seq, ChIP-seq, GUIDE-seq, BAR-seq, RRBS, WGBS, WES, WGS) and more generally the management and development of infrastructures for treating data produced using high throughput technologies of molecular biology. He is the coauthor of more than sixty papers published in international peer-reviewed journals and more than sixty contributions in International Conference Proceedings.
Interest areas:
Bioinformatics, Computational Biology, Systems Biology, Multi-omics data analysis and integration, Gene Therapy, Genome Editing, High-Performance Computing, Big Data Analytics, Machine Learning
International Ids
Scopus Author ID: 12771696900
WoS Researcher ID: O-2543-2015
Orcid ID: 0000-0003-3587-3680
LinkedIn: in/ivan-merelli-88976830
Research Gate: http://www.researchgate.net/profile/Ivan_Merelli
H-indexes
Google Scholar H-Index: 20
Scopus H-Index: 18
ISI-WoS H-Index: 16
Education
Università degli Studi di Milano-Bicocca - piazza della Sienza 1, Milano Graduation date: 2009-02-09 Attendance time period: 01/2006 - 12/2008 Thesis: Image based surface analysis oriented to macromolecular functional annotation and interaction screening |
Politecnico di Milano - piazza Leonardo da Vinci 33, Milano Grade: 90/100 Graduation date: 2003-12-19 Attendance time period: 09/1997 - 09/2003 Thesis: Analisi e modellizzazione di superfici proteiche per l'identificazione di determinanti funzionali |
Research activities classification (ERC)
COMPUTER SCIENCE AND INFORMATICS: INFORMATICS AND INFORMATION SYSTEMS, COMPUTER SCIENCE, SCIENTIFIC COMPUTING, INTELLIGENT SYSTEMS
GENETICS, GENOMICS, BIOINFORMATICS AND SYSTEMS BIOLOGY: GENETICS, POPULATION GENETICS, MOLECULAR GENETICS, GENOMICS, TRANSCRIPTOMICS, PROTEOMICS, METABOLOMICS, BIOINFORMATICS, COMPUTATIONAL BIOLOGY, BIOSTATISTICS, BIOLOGICAL MODELLING AND SIMULATION, SYSTEMS BIOLOGY, GENETIC EPIDEMIOLOGY
LIFE SCIENCES
PHYSICAL SCIENCES AND ENGINEERING
Skills
BIOINFORMATICS AND STATISTICAL ANALYSIS OF GENOMIC DATA
BIOLOGICAL DATA INTEGRATION
GRID AND CLOUD COMPUTING
HIGH PERFORMANCE COMPUTING
Research products
L. Verderame, I. Merelli, L. Morganti, E. Corni, D. Cesini, D. D'Agostino and A. Merlo
A secure cloud-edges computing architecture for metagenomics analysis
(2020) in Future generation computer systems
L. Morganti, E. Corni, L. Lama, C. Pellegrino, F. Zanon Boito, I. Merelli, D. D'Agostino, and D. Cesini
On low-power SoCs as storage bricks for Bioinformatics
(2020) in Concurrency and computation (Online)
Ferrari, Samuele; Jacob, Aurelien; Beretta, Stefano; Unali, Giulia; Albano, Luisa; Vavassori, Valentina; Cittaro, Davide; Lazarevic, Dejan; Brombin, Chiara; Cugnata, Federica; Kajaste-Rudnitski, Anna; Merelli, Ivan; Genovese, Pietro; Naldini, Luigi
Efficient gene editing of human long-term hematopoietic stem cells validated by clonal tracking
(2020) in Nature biotechnology (Print)
Valentina Capo1, Sara Penna1, Ivan Merelli2, Matteo Barcella1, Serena Scala1, Luca Basso-Ricci1, Elena Draghici1, Eleonora Palagano3, Erika Zonari1, Giacomo Desantis1, Paolo Uva4, Roberto Cusano4, Lucia Sergi Sergi1, Laura Crisafulli3, Despina Moshous5, Polina Stepensky6, Katarzyna Drabko7, Zühre Kaya8, Ekrem Unal9, Alper Gezdirici10, Giuseppe Menna11, Marta Serafini12, Alessandro Aiuti1, Silvia Laura Locatelli13, Carmelo Carlo-Stella13, Ansgar S. Schulz14, Francesca Ficara3, Cristina Sobacchi3, Bernhard Gentner1 and Anna Villa1
Expanded circulating hematopoietic stem/progenitor cells as novel cell source for the treatment of TCIRG1 osteopetrosis
(2020) in Haematologica (Roma)
Verrillo, Lucia and Mangano, Eleonora and Drongitis, Denise and Merelli, Ivan and Pischedda, Francesca and Piccoli, Giovanni and Consolandi, Clarissa and Bordoni, Roberta and Miano, Maria Giuseppina
A reliable strategy for single-cell RNA sequencing analysis using cryoconserved primary cortical cells.
(2020) in Journal of neuroscience methods
D'Agostino D.; Lio P.; Aldinucci M.; Merelli I.
NeoHiC: A web application for the analysis of Hi-C data
(2020) CIBB 2019: Computational Intelligence Methods for Bioinformatics and Biostatistics, Bergamo, Italy, 4-6/9/2019
I. Merelli, P. Liò, I. Kotenko, and D. D'Agostino
Latest advances in parallel, distributed, and network-based processing
(2020) in Concurrency and computation (Online)
D. D'Agostino, I. Merelli, M. Aldinucci, and P. Liò
NeoHiC: a web application for the analysis of Hi-C data
(2019) Computational Intelligence methods for Bioinformatics and Biostatistics (CIBB 2019), Bergamo, Italy, 4-6/9/2019
Schiroli G1, Conti A1, Ferrari S2, Della Volpe L2, Jacob A3, Albano L1, Beretta S4, Calabria A1, Vavassori V2, Gasparini P5, Salataj E6, Ndiaye-Lobry D6, Brombin C7, Chaumeil J6, Montini E1, Merelli I8, Genovese P9, Naldini L10, Di Micco R11.
Precise Gene Editing Preserves Hematopoietic Stem Cell Function following Transient p53-Mediated DNA Damage Response
(2019) in Cell stem cell (Print)
I. Merelli, F. Fornari, F. Tordini, D. D'Agostino, M. Aldinucci, and D. Cesini
Exploiting Docker containers over Grid computing for a comprehensive study of chromatin conformation in different cell types
(2019) in Journal of parallel and distributed computing (Print)
Andrea Calabria, Stefano Beretta, Ivan Merelli, Giulio Spinozzi, Stefano Brasca, Yuri Pirola, Fabrizio Benedicenti, Erika Tenderini, Paola Bonizzoni, Luciano Milanesi, Eugenio Montini
?-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites
(2019) in Bioinformatics (Oxf., Print)
Tangherloni A.; Spolaor S.; Rundo L.; Nobile M.S.; Cazzaniga P.; Mauri G.; Lio P.; Merelli I.; Besozzi D.
GenHap: A novel computational method based on genetic algorithms for haplotype assembly
(2019) in BMC bioinformatics
D. D'Agostino, L. Morganti, E. Corni, D. Cesini, and I. Merelli
Combining edge and cloud computing for low-power, cost-effective metagenomics analysis
(2019) in Future generation computer systems
D. D'Agostino, A. Quarati, A. Clematis, L. Morganti, E. Corni, V. Giansanti, D. Cesini, and I. Merelli
SoC-based computing infrastructures for scientific applications and commercial services: Performance and economic evaluations
(2019) in Future generation computer systems
A.J. Banegas-Luna, B. Imbernón, A. Llanes Castro, A. Pérez-Garrido, J.P. Cerón-Carrasco, S. Gesing, I. Merelli, D. D'Agostino, and H. Pérez-Sánchez
Advances in distributed computing with modern drug discovery
(2019) in Expert opinion on drug discovery (Print)
Andrea Calabria, Stefano Beretta*, Ivan Merelli*, Giulio Spinozzi, Stefano Brasca, Yuri Pirola, Fabrizio Benedicenti, Erika Tenderini, Paola Bonizzoni, Luciano Milanesi*, Eugenio Montini
y-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites
(2019) in Bioinformatics (Oxf., Print)
Carlo Maj1*+, Tiago Azevedo2+, Valentina Giansanti3+, Oleg Borisov1, Giovanna Maria Dimitri2, Simeon Spasov2, Alzheimer's Disease Neuroimaging Initiative, Pietro Lió2* and Ivan Merelli3*
Integration of Machine Learning Methods to Dissect Genetically Imputed Transcriptomic Profiles in Alzheimer's Disease
(2019) in Frontiers in genetics
V. Giansanti, S. Beretta, D. Cesini, D. D'Agostino, and I. Merelli
Parallel Computing in Deep Learning: bioinformatics case studies
(2019) 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP), Pavia (Italy), 13-15/02/2019
I. Merelli, L. Morganti, E. Corni, C. Pellegrino, D. Cesini, L. Roverelli, G. Zereik, and D. D'Agostino
Low-power portable devices for metagenomics analysis: Fog computing makes bioinformatics ready for the Internet of Things
(2018) in Future generation computer systems
Beretta, Stefano; Castelli, Mauro; Munoz, Luis; Trujillo, Leonardo; Martinez, Yuliana; Popovic, Ales; Milanesi, Luciano; Merelli, Ivan
A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP
(2018) in Complexity (N.Y.N.Y.)
Caudai C.; Salerno E.; Zoppè M.; Merelli I.; Tonazzini A.
ChromStruct 4: a Python code to estimate the chromatin structure from Hi-C data
(2018) in IEEE/ACM transactions on computational biology and bioinformatics (Online)
L. Morganti, D. Cesini, E. Corni, L. Lama, C. Pellegrino, I. Merelli, and D. D'Agostino
Low-power storage bricks and bioinformatics on Systems-On-Chip
(2018) 26th Euromicro International Conference on Parallel, Distributed, and Network- Based Processing (PDP 2018), Cambridge, UK, 21-23/03/2018
V. Giansanti, D. D'Agostino, C. Maj, S. Beretta, and I. Merelli
Computing empirical p-values for estimating gene-gene interactions in Genome-Wide Association Studies: A parallel computing approach
(2018) 26th Euromicro International Conference on Parallel, Distributed, and Network- Based Processing PDP 2018, Cambridge, UK, 21-23/03/2018
Caudai C.; Zoppè M.; Salerno E.; Merelli I.; Tonazzini A.
Parallelizable strategy for the estimation of the 3D structure of biological macromolecules
(2018) PDP 2018 - 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP), Cambridge, UK, 21-23 March 2018
Tordini, Fabio; Drocco, Maurizio; Misale, Claudia; Milanesi, Luciano; Lio, Pietro; Merelli, Ivan; Torquati, Massimo; Aldinucci, Marco
NuChart-II: The road to a fast and scalable tool for Hi-C data analysis
(2017) in The international journal of high performance computing applications
Spinozzi G1, Calabria A1, Brasca S1, Beretta S2, Merelli I3, Milanesi L3, Montini E4.
VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites
(2017) in BMC bioinformatics
Andrea Bracciali, Marco Aldinucci, Murray Patterson, Tobias Marschall, Nadia Pisanti, Ivan Merelli and Massimo Torquati
PWHATSHAP: efficient haplotyping for future generation sequencing
(2017) in BMC bioinformatics
Cesana, Daniela; de Sio, Francesca R. Santoni; Rudilosso, Laura; Gallina, Pierangela; Calabria, Andrea; Beretta, Stefano; Merelli, Ivan; Bruzzesi, Elena; Passerini, Laura; Nozza, Silvia; Vicenzi, Elisa; Poli, Guido; Gregori, Silvia; Tambussi, Giuseppe; Montini, Eugenio
HIV-1-mediated insertional activation of STAT5B and BACH2 trigger viral reservoir in T regulatory cells
(2017) in Nature communications
Mingione, Alessandra; Maruca, Katia; Chiappori, Federica; Pivari, Francesca; Brasacchio, Caterina; Quirino, Tiziana; Merelli, Ivan; Soldati, Laura; Bonfanti, Paolo; Mora, Stefano
High parathyroid hormone concentration in tenofovir-treated patients are due to inhibition of calcium-sensing receptor activity.
(2017) in Biomedicine & pharmacotherapy (Online)
I. Merelli, P. Cozzi, E. Ronchieri, D. Cesini, and D. D'Agostino
Porting bioinformatics applications from grid to cloud: a macromolecular surface analysis application case study
(2017) in International journal of high performance computing applications (Online)
D. D'Agostino, D. Cesini, E. Corni, A. Ferraro, L. Morganti, A. Quarati, and I. Merelli
Performance and economic evaluations in adopting low power architectures: A real case analysis
(2017) 14th International Conference on Economics of Grids, Clouds, Systems, and Services (GECON 2017), Biarritz, France, 19-21/09/2017
S. Beretta, L. Morganti, E. Corni, A. Ferraro, D. Cesini, D. D'Agostino, L. Milanesi, and I. Merelli
Low-power architectures for miRNA-target genome wide analysis
(2017) 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, Saint Petersburg, 06-08/03, 2017
L. Morganti, E. Corni, A. Ferraro, D. Cesini, D. D'Agostino, and I. Merelli
Implementing a space-aware stochastic simulator on low-power architectures: a systems biology case study
(2017) 25th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, Saint Petersburg, 06-08/03/2017
Chiappori, Federica; Milanesi, Luciano; Merelli, Ivan
HPC analysis of multiple binding sites communication and allosteric modulations in drug design: The HSP case study
(2016) in Current drug targets (Print)
Landini, Martina; Merelli, Ivan; Raggi, M. Elisabetta; Galluccio, Nadia; Ciceri, Francesca; Bonfanti, Arianna; Camposeo, Serena; Massagli, Angelo; Villa, Laura; Salvi, Erika; Cusi, Daniele; Cusi, Daniele; Molteni, Massimo; Milanesi, Luciano; Marabotti, Anna; Marabotti, Anna; Mezzelani, Alessandra
Association analysis of noncoding variants in neuroligins 3 and 4X genes with autism spectrum disorder in an Italian cohort
(2016) in International journal of molecular sciences (Print)
Tordini, Fabio; Aldinucci, Marco; Milanesi, Luciano; Lio, Pietro; Merelli, Ivan
The Genome Conformation As an Integrator of Multi-Omic Data: The Example of Damage Spreading in Cancer.
(2016) in Frontiers in genetics
Beretta, Stefano; Castelli, Mauro; Martinez, Yuliana; Munoz, Luis; Silva, Sara; Trujillo, Leonardo; Milanesi, Luciano; Merelli, Ivan
A Machine Learning Approach for the Integration of miRNA-target Predictions
(2016) in Proceedings - Euromicro Workshop on Parallel and Distributed Processing
Cesana, Daniela; De Sio, Francesca R. Santoni; Rudilosso, Laura; Gallina, Pierangela; Calabria, Andrea; Passerini, Laura; Nozza, Silvia; Vicenzi, Elisa; Poli, Guido; Gregori, Silvia; Tambussi, Giuseppe; Montini, Eugenio
HIV-1 Mediated Insertional Activation of STAT5B and BACH2 Promotes the Formation of a Viral Reservoir in T Regulatory Cells
(2016) in Molecular therapy (Print)
Tordini, Fabio; Aldinucci, Marco; Milanesi, Luciano; Lio, Pietro; Merelli, Ivan
The Genome Conformation As an Integrator of Multi-Omic Data: Thie Example of Damage Spreading in Cancer
(2016) in Frontiers in genetics
Kel, Ivan; Chang, Zisong; Galluccio, Nadia; Romeo, Margherita; Beretta, Stefano; Diomede, Luisa; Mezzelani, Alessandra; Milanesi, Luciano; Dieterich, Christoph; Merelli, Ivan
SPIRE, a modular pipeline for eQTL analysis of RNA-Seq data, reveals a regulatory hotspot controlling miRNA expression in C. elegans
(2016) in Molecular bioSystems (Print)
Cesana, Daniela; Gallina, Pierangela; Rudilosso, Laura; Calabria, Andrea; Spinozzi, Giulio; Merelli, Ivan; Milanesi, Luciano; Montini, Eugenio
Lentiviral Vectors with a Reduced Splicing Interference Potential Have a Significantly Improved Safety Profile In Vivo
(2016) in Molecular therapy (Print)
Chiappori, Federica; Mattiazzi, Luca; Milanesi, Luciano; Merelli, Ivan
A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the alpha B-Crystallin case study
(2016) in BMC bioinformatics
G. Paschina, L. Roverelli, D. D'Agostino, F. Chiappori, and I. Merelli
Clustering protein structures with Hadoop
(2016) Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB), Naples, Italy, 10-12/9/2015
E. Ronchieri, D. D'Agostino, L. Milanesi, and I. Merelli
MicroRNA-target interaction: a parallel approach for computing pairing energy
(2016) 24th Euromicro International Conference on Parallel and Distributed, and Network-Based Processing 2016, Heraklion, Greece, February 17-19, 2016
Federica CHIAPPORI1, Luca MATTIAZZI1,2, Luciano MILANESI1, Ivan MERELLI1
Effect of serine phosphorylation on aB-Crystallin interface multimeric form
(2016) EMBO course "Molecular chaperones: From molecules to cells and misfolding diseases", Crete, 08-13/05/2015
Federica Chiappori, Ivan Merelli, Luciano Milanesi
Allosteric modulation: the Hsp70 case study
(2016) Proteomics, Roma, 24-26/10/2016
Shavit, Yoli and Merelli, Ivan and Milanesi, Luciano and Lio', Pietro
How computer science can help in understanding the 3D genome architecture
(2015) in Briefings in bioinformatics
Merelli I, Tordini F, Drocco M, Aldinucci M, Liò P and Milanesi L
Integrating multi-omic features exploiting Chromosome Conformation Capture data
(2015) in Frontiers in genetics
Chiappori, Federica; Fumian, Marco; Milanesi, Luciano; Merelli, Ivan
DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70
(2015) in PloS one
D. D'Agostino, G. Pasquale, and I. Merelli
A fine-grained CUDA implementation of the multi-objective evolutionary approach NSGA-II: potential impact for computational and systems biology applications
(2015) Computational Intelligence Methods for Bioinformatics and Biostatistics, Cambridge, UK, June 26-28, 2014
Tordini, Fabio; Drocco, Maurizio; Merelli, Ivan; Milanesi, Luciano; Liò, Pietro; Aldinucci, Marco
NuChart-II: A graph-based approach for analysis and interpretation of Hi-C data
(2015) cibb2015, Cambridge
Tordini, Fabio; Drocco, Maurizio; Misale, Claudia; Milanesi, Luciano; Lio, Pietro; Merelli, Ivan; Aldinucci, Marco
Parallel Exploration of the Nuclear Chromosome Conformation with NuChart-II
(2015) 23rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing, Turku, Finland, 4-6 March 2015
D. D'Agostino, A. Clematis, E. Danovaro, and I. Merelli
Modelling of Protein Surface Using Parallel Heterogeneous Architectures
(2015) Springer, Cham, Heidelberg, New York, Dordrecht, London (Svizzera) in Mathematical Models in Biology - Bringing Mathematics to Life, 2015
Landini M1, Mezzelani A1, Merelli I1, Raggi ME2, Ciceri F2, Villa L2, Molteni M2, Marabotti A2-3, Milanesi L1
Three SNP aplotypes in neuroligins may correlate to autism susceptibility
(2014) European Human Genetics Conference, Milano, 31 maggio-3 giugno 2014
I. Merelli, H. Perez-Sanchez, S. Gesing, and D. D'Agostino
Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives
(2014) in BioMed Research International (Print)
D. D'Agostino, G. Pasquale, A. Clematis, C. Maj, E. Mosca, L. Milanesi, and I. Merelli
Parallel solutions for voxel-based simulations of reaction-diffusion systems
(2014) in BioMed Research International (Online)
D. D'Agostino, A. Clematis , S. Decherchi , W. Rocchia , L. Milanesi, and I. Merelli
CUDA accelerated molecular surface generation
(2014) in Concurrency and computation
E. Ronchieri, D. Cesini, D. Dagostino, V. Ciaschini, G.D. Torre, P. Cozzi, D. Salomoni, A. Clematis, L. Milanesi, and I.Merelli
The WNoDeS cloud virtualization framework: a macromolecular surface analysis application case study
(2014) 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2014),, Torino, Italia, 12-14 Febbraio 2014
G. Pasquale, C. Maj, A. Clematis, E. Mosca, L. Milanesi, I. Merelli, and D. D'Agostino
A CUDA implementation of the spatial TAU-leaping in crowded compartments (STAUCC) simulator
(2014) 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2014),, Torino, Italia, 12-14 Febbraio 2014
Perez-Sanchez, Horacio; Cecilia, Jose M.; Merelli, Ivan
The role of High Performance Computing in Bioinformatics
(2014) IWBBIO2014, Granada, 7 - 9 April 2014
Merelli, Ivan; Mosca, Ettore; Cesini, Daniele; Ronchieri, Elisabetta; Milanesi, Luciano
Evaluating mixed HTC/cloud approaches for parameter sweep applications in systems biology
(2014) IWBBIO2014, Granada, 7 - 9 April 2014
High-performance computing and big data in omics-based medicine
(2014)
Latest advances in distributed, parallel, and graphic processing unit accelerated approaches to computational biology
(2014)
G. Pasquale, E. Mosca, I. Merelli, L. Milanesi, A. Clematis, and D. D'Agostino
A full fine-grained parallelization of the multi-objective evolutionary approach NSGA-II for the CUDA architecture
(2014) BITS Annual Meeting 2014, Roma, Italia, 26-28 Febbraio 2014
Chiappori F, Milanesi L, Merelli I.
Protein threading modeling approaches for describing the structural conformation of the Calcium-sensing receptor cytoplasmic C-terminal portion.
(2014) BITS, Roma, 2014
Mezzelani A1, Landini M1, Galluccio N1, Merelli I1, Raggi ME2§, Ciceri F2§, Villa L2§, Molteni M2§, Bonfanti A2§, Massagli A2*, Camposeo S2*, Marabotti A2§-3, Milanesi L1
Sex-specific neurotoxicity as possible cause of regressive autism
(2014) Toxicology and Applied Pharmacology, Chicago, 20-22 ottobre 2014
Chiappori, Federica; Merelli, Ivan; Milanesi, Luciano; Marabotti, Anna
Static and dynamic interactions between GALK enzyme and known inhibitors: Guidelines to design new drugs for galactosemic patients
(2013) in European journal of medicinal chemistry
Merelli, Ivan; Lio, Pietro; Milanesi, Luciano
NuChart: An R Package to Study Gene Spatial Neighbourhoods with Multi-Omics Annotations
(2013) in PloS one
Maj, Carlo; Mosca, Ettore; Merelli, Ivan; Mauri, Giancarlo; Milanesi, Luciano
SENSITIVITY ANALYSIS FOR STUDYING THE RELATION BETWEEN BIOCHEMICAL REACTIONS AND METABOLIC PHENOTYPES
(2013) in Journal of bioinformatics and computational biology (Print)
D. D'Agostino, A. Clematis, A. Quarati, D. Cesini, F. Chiappori, L. Milanesi, and I. Merelli
Cloud infrastructures for in silico drug discovery: economic and practical aspects
(2013) in BioMed Research International (Online)
Merelli, Ivan; Calabria, Andrea; Cozzi, Paolo; Viti, Federica; Mosca, Ettore; Milanesi, Luciano
SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS
(2013) in BMC bioinformatics
E. Mosca, I. Merelli, L. Milanesi, A. Clematis, and D. D'Agostino
A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems
(2013) 2013 21st Euromicro International Conference on Parallel, Distributed, and Network-Based Processing PDP, Belfast, 27th February - 1st March 2013
Chiappori, Federica; Merelli, Ivan; Colombo, Giorgio; Milanesi, Luciano; Morra, Giulia
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations
(2013) Biophysical Society 57th annual meeting, Philadelphia, February 2-6, 2013
Fumian M, Chiappori F, Merelli I, Milanesi L
Comparative analysis of the human Hsp70 and of the bacterial homolog DnaK for the identification of key differential interaction residues through Molecular Dynamics simulations
(2013) BITS, Udine, 2013
Chiappori F., Merelli I., Colombo G., Milanesi L., Morra G.
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations
(2012) in PLOS computational biology (Online)
Chiappori, Federica; Pucciarelli, Sandra; Merelli, Ivan; Ballarini, Patrizia; Miceli, Cristina; Milanesi, Luciano
Structural thermal adaptation of beta-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii
(2012) in Proteins (Print)
Merelli I , Viti F , Milanesi L.
IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.
(2012) in BMC bioinformatics
Viti F., Merelli I, Calabria A., Cozzi P., Mosca E.,Alfieri R., Milanesi L.
Ontology-based resources for bioinformatics analysis.
(2012) in International journal of metadata, semantics and ontologies (Online)
Maj C., Mosca E., Merelli I.,Mauri G., Milanesi L.
Sensitivity analysis for unveiling the relation between biochemical reaction and metabolics phenotypes.
(2012) in Journal of bioinformatics and computational biology (Print)
Merelli I, Viti F, Milanesi L
IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis
(2012) in BMC bioinformatics
D. D'Agostino, A. Clematis, A. Guffanti, L. Milanesi, and I. Merelli
A CUDA-based implementation of the SSAKE genomics application
(2012) 20th Euromicro Conference on Parallel, Distributed and network-based Processing (Euromicro-PDP'12), Garching, Germany, 15-17 February, 2012
F. Viti, I. Merelli, S. Scaglione, L. Milanesi
Bioinformatics approach for data management about bone cells grown on substitute materials
(2012) NETTAB workshop on Integrated Bio-Research
Chiappori F, Merelli I, Milanesi L, Marabotti A
The Analysis of Interactions Between Galk Enzyme and Known Inhibitors Suggests Guidelines to Develop New Drugs for Galactosemic Patients.
(2012) 3DSIG: Structural Bioinformatics and Computational Biophysics, Long Beach, 13-14 luglio 2012
Viti, Federica; Merelli, Ivan; Calabria, Andrea; Cozzi, Paolo; Mosca, Ettore; Alfieri, Roberta; Milanesi, Luciano
Ontology-based resources for bioinformatics analysis
(2011) in International journal of metadata, semantics and ontologies (Print)
Corrada, Dario; Viti, Federica; Merelli, Ivan; Battaglia, Cristina; Milanesi, Luciano
myMIR: a genome-wide microRNA targets identification and annotation tool
(2011) in Briefings in bioinformatics
Merelli, Ivan; Pescini, Dario; Mosca, Ettore; Cazzaniga, Paolo; Maj, Carlo; Mauri, Giancarlo; Milanesi, Luciano
Grid Computing for Sensitivity Analysis of Stochastic Biological Models
(2011) in Lecture notes in computer science
I. Merelli, P. Cozzi, D. D'Agostino, A. Clematis and L. Milanesi
Image based surface matching algorithm oriented to structural biology
(2011) in IEEE/ACM transactions on computational biology and bioinformatics (Print)
Carlo Maj1,2, Ettore Mosca1,Ivan Merelli1 , Roberta Alfieri1, Dario Pescini3, Paolo Cazzaniga4, Giancarlo Mauri2, Luciano Milanesi1
Sensitivity analysis for inferring properties of deterministic and stochastic models
(2011) Sysbiohealth Symposium, Bologna, 14-15 dicembre 2011
D. D'Agostino, I. Merelli, R. L. Warren, A. Guffanti, L. Milanesi and A. Clematis
Parallelization of the SSAKE genomics application.
(2011) PDP 2011, Aya Napa, Cyprus
Chiappori F, Merelli I, Milanesi L, Marabotti A.
Computational Biology Strategy for the Development of Ligands of GALK Enzyme as Potential Drugs for People with Classical Galactosemia.
(2011) BITS, Pisa, 2011
Merelli, Ivan; Pescini, Dario; Mosca, Ettore; Cazzaniga, Paolo; Maj, Carlo; Mauri, Giancarlo; Milanesi, Luciano
Grid computing for sensitivity analysis of stochastic biological models
(2011) in , 2011
Viti F.; Merelli I.; Timmermans M.; den Bakker M.; Beltrame F.; Riegman P.; Milanesi L.
Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study
(2010) in BMC bioinformatics
Chiappori F; Merelli I; Milanesi L; Rovida E
Exploring the role of the phospholipid ligand in Endothelial Protein C Receptor: a molecular dynamics study
(2010) in Proteins (Print)
Mosca E.; Alfieri R.; Merelli I.; Viti F.; Calabria A.; Milanesi L.
A multilevel data integration resource for breast cancer study
(2010) in BMC systems biology
Merelli I.; Guffanti A.; Fabbri M.; Cocito A.; Furia L.; Grazini U.; Bonnal R.J.; Milanesi L.; McBlane F.
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes
(2010) in Nucleic acids research
Calabria A., Mosca E., Viti F., Merelli I., Milanesi L.
SNPRanker: a tool for identification and scoring of SNPs associated to target genes.
(2010) in Journal of integrative bioinformatics
P. Cozzi, I. Merelli, D. D'Agostino, and L. Milanesi
A parallel implementation of genetic algorithms for parameters estimation of molecular surfaces similarity analysis.
(2010) BITS 2010
D'Agostino D., Clematis A., Merelli I., Cozzi P., Milanesi L.
A Parallel Algorithm for Molecular Surface Matching Through Image Representation.
(2010) Parallel, Distributed and Network-Based Processing
Cozzi P., Viti F., Merelli I., Milanesi L.
Exploitation of a 3D-oriented ontology for choosing the representative proteins ion protein surfaces comparison.
(2010) FOCUS K3D Conference on Semantic 3D Media and Content
Viti F., Merelli I., Di Silvestre D., Brunetti P., Milanesi L., Mauri P.
Repository for the management of tandem MS data
(2010) Nettab2010
Ettore Mosca, Roberta Alfieri, Ivan Merelli, Federica Viti, Andrea Calabria, Luciano Milanesi
The Genes-to-Systems Breast Cancer (G2SBC) Database
(2010)
D'Ursi P; Chiappori F; Merelli I; Cozzi P; Rovida E; Milanesi L
Virtual screening pipeline and ligand modelling for H5N1 neuraminidase
(2009) in Biochemical and biophysical research communications (Print)
Mosca, E.; Merelli, I.; Alfieri, R.; Milanesi, L.
A distributed approach for parameter estimation in Systems Biology models
(2009) in Il Nuovo cimento della Società italiana di fisica. C. Geophysics and space physics (Testo stamp.)
Chiappori F; D'Ursi P; Merelli I; Milanesi L; Rovida E
In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study
(2009) in BMC bioinformatics
Merelli, Ivan; Caprera, Andrea; Stella, Alessandra; Del Corvo, Marcello; Milanesi, Luciano; Lazzari, Barbara
The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections
(2009) in BMC bioinformatics
Cozzi, Paolo; Merelli, Ivan; Milanesi, Luciano
A Visualization ToolKit Based Application for Representing Macromolecular Surfaces
(2009) in Lecture notes in computer science
Barbara Lazzari 1; Andrea Caprera 1; Alessandro Cestaro 2; Ivan Merelli 3;
Marcello Del Corvo 1; Paolo Fontana 2; Luciano Milanesi 3; Riccardo Velasco 2; Alessandra Stella 1,4
Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs
Barbara Lazzari 1; Andrea Caprera 1; Alessandro Cestaro 2; Ivan Merelli 3;
(2009) in BMC plant biology (Online)
D'Agostino, Daniele; Clematis, Andrea; Merelli, Ivan; Cozzi, Paolo; Milanesi, Luciano
Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening
(2009) 17th Euromicro Conference on Parallel, Distributed and network-based Processing (PDP 2009)
Alfieri R., Bartocci E., Merelli E., Milanesi L.
Modelling Cell Cycle Regulation Using Hybrid Automata
(2009) Sysbiohealth Simposium
Mosca E., Alfieri R., Viti F., Merelli I., Milanesi L.
Nervous System Database (NSD): data integration spanning molecular and system levels
(2009) 2nd INCF Congress of Neuroinformatics
Mosca, Ettore; Merelh, Ivan; Milanesi, Luciano; Cazzaniga, Paolo; Pescini, Dario; Mauri, Giancarlo
Stochastic simulations on a grid framework for parameter sweep applications in biological models
(2009) High Performance Computational Systems Biology, 2009. HIBI '09., Trento, 14-16 Oct. 2009
Viti, Federica; Mosca, Ettore; Merelli, Ivan; Calabria, Andrea; Alfieri, Roberta; Milanesi, Luciano
Ontological Enrichment of the Genes-to-Systems Breast Cancer Database
(2009) in , 2009
Milanesi, Luciano; Alfieri, Roberta; Mosca, Ettore; Viti, Federica; D'Ursi, Pasqualina; Merelli, Ivan
Sys-bio gateway: A framework of bioinformatics database resources oriented to systems biology
(2009) in International Workshop on Portals for Life Sciences, 2009
Viti F., Mosca E., Merelli I., Calabria A., Alfieri R., Milanesi L.
Metadata and Semantic Research, Ch. Ontological Enrichment of the Genes-to-Systems Breast Cancer Database
(2009) in , 2009
Viti Federica, Ivan Merelli, Andrea Caprera, Barbara Lazzari, Alessandra Stella, Luciano Milanesi
Ontology-based, Tissue MicroArray oriented, image centred tissue bank
(2008) in BMC bioinformatics
Alfieri Roberta; Ivan Merelli; Ettore Mosca; Luciano Milanesi
The Cell Cycle DB: a systems biology approach to cell cycle analysis
(2008) in Nucleic acids research
Merelli I.; Orro A.; D'Agostino D.; Clematis A.; Milanesi L.
A Parallel Protein Surface Reconstruction System
(2008) in International journal of bioinformatics research and applications (Print)
Panzitta, Francesca; Caprera, Andrea; Merelli, Ivan; Milanesi, Luciano; Williams, John L.; Lazzari, Barbara; Stella, Alessandra
Mining the Bovine Genome with the "Bovine SNP Retriever"
(2008) in Journal of heredity
Viti, Federica; Merelli, Ivan; Caprera, Andrea; Lazzari, Barbara; Stella, Alessandra; Milanesi, Luciano
Ontology-based, Tissue MicroArray oriented, image centered tissue bank
(2008) in BMC bioinformatics
Galizia, Antonella; Viti, Federica; Orro, Alessandro; D'Agostino, Daniele; Merelli, Ivan; Milanesi, Luciano; Clematis, Andrea
TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling
(2008) CCGRID 2008, Lyon, France, 19-22 May 2008
Galizia A.; Viti F.; D'agostino D.; Merelli I.; Milanesi L.; Clematis A.
Experimenting Grid Protocols to improve privacy preservation in efficient distributed image processing
(2008) International Parallel Computing Conference 2007, RWTH Aachen Univ, Aachen,Germany, SEP 04-07, 2007
D'Agostino D.; Merelli I.; Clematis A.; Milanesi L.; Orro A.
A Parallel Workflow for the Reconstruction of Molecular Surfaces
(2008) International Parallel Computing Conference 2007, RWTH Aachen Univ, Aachen,Germany, SEP 04-07, 2007
Merelli I.; Cozzi P.; D'Agostino D.; Clematis A.; Milanesi L.
Image based system for surface matching in macromolecular screening
(2008) 2008 IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2008), Philadelphia, PA, USA, Nov. 7-9, 2008., Philadelphia, USA, 3-5 November 2008
Galizia Antonella, Viti Federica, Orro Alessandro, D'Agostino Daniele, Merelli Ivan, Luciano Milanesi, Andrea Clematis.
TMAinspect, an EGEE Framework for Tissue MicroArray image handling. Modern computer tools for the biosciences. MBIO08 - International Conference CCGrid 2008 22 may 2008, Lyon, France.
(2008) MBIO08 - International Conference CCGrid 2008 22 may 2008, Lyon, France., Lyon, France.
Chiappori Federica, Ivan Merelli, Luciano Milanesi, Ermanna Rovida.
Comparison of protein-protein algorithms for the study of Proteinase-3 Endothelial Protein C Receptor complex.
(2008) SysBioHealth 2008 , 24th to 25th November, Bologna Italy, Bologna Italy
Chiappori F., P. DUrsi , I. Merelli, E. Rovida, L. Milanesi
Pipeline for saturation mutagenesis and docking screening in the study of protein-ligand interaction: the Endothelial Protein C Receptor (EPCR)
(2008) EMBO course "Docking Prediction in Protein-Protein interaction", Barcelona Supercomputing Centre, 2008., Barcelona, Spain
Milanesi L, Mosca E and Alfieri R
The BrainGeneExpress Database: a data integration approach for neuroinformatic research oriented to systems biology.
(2008) Frontiers in Neuroinformatics. Conference Neuroinformatics 2008. Stockholm,Sweden September 7 - 9, 2008., Stockholm,Sweden
Cozzi Paolo, Ivan Merelli, and Luciano Milanesi.
A Visualization ToolKit Based Application for Representing Macromolecular Surfaces.
(2008) Computational Intelligence Methods For Bioinformatics And Biostatistic, Vietri sul Mare (Salerno), 3-4 October 2008 - Lecture Notes in Computer Science (LNCS), Ed. Springer 2008, Vietri sul Mare (Salerno), Ita
Mosca E., I. Merelli, R. Alfieri L. Milanesi.
A Grid oriented evolution strategy to approach the parameter estimation problem in System Biology models.
(2008) The Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2008) Novosibirsk, Russia June 22-28, 2008, Novosibirsk, Russia
Chiappori Federica, Pasqualina DUrsi, Ivan Merelli, Marco Salina, Ermanna Rovida, Luciano Milanesi.
A pipeline for saturation mutagenesis and docking, applied to the endothelial protein C receptor .
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Villa Monastero, Varenna, Italy, Varenna, Italy
Merelli Ivan, Andrea Caprera, Alessandra Stella, Luciano Milanesi, Barbara Lazzari.
The Human EST Ontology Explorer: a tissue-oriented visualisation system for ontologies distribution in human EST collections.
(2008) NETTAB2008 Bioinformatics Methods or Biomedical Complex System Applications, 19-21 May 2008, Vlla Monastero, Varenna, Italy, Varenna, Italy
D'Agostino D., Merelli I., Clematis A., Orro A., Milanesi L.
Parallel Workflow for the Reconstruction of Molecular Surfaces
(2008) in , 2008
Trombetti GA, Merelli I, Orro A, Milanesi L.
BGBlast: a BLAST grid implementation with database self-updating and adaptive
(2007)
Alfieri R, Mosca E, Merelli I, Milanesi L.
Parameter estimation for cell cycle ordinary differential equation (ODE) models
(2007)
Merelli, Ivan; Morra, Giulia; Milanesi, Luciano
Evaluation of a grid based molecular dynamics approach for polypeptide simulations
(2007) in IEEE transactions on nanobioscience
Alfieri Roberta; Merelli Ivan; Mosca Ettore; Milanesi Luciano.
A Data Integration Approach for Cell Cycle Analysis oriented to Model Simulation in Systems Biology
(2007) in BMC systems biology
Viti F., Merelli I., Galizia A., D'Agostino D., Clematis A., Milanesi L.
Tissue MicroArray: a distributed Grid approach for image analysis.
(2007) in Studies in health technology and informatics (Online)
Trombetti GA, Merelli I, Orro A, Milanesi L.
BGBlast: a BLAST grid implementation with database self-updating and adaptive
(2007) in BMC bioinformatics
Jacq, Nicolas; Breton, Vincent; Chen, Hsin-Yen; Ho, Li-Yung; Hofmann, Martin; Kasam, Vinod; Lee, Hurng-Chun; Legre, Yannick; Lin, Simon C.; Maass, Astrid; Medernach, Emmanuel; Merelli, Ivan; Milanesi, Luciano; Rastelli, Giulio; Reichstadt, Matthieu; Salzemann, Jean; Schwichtenberg, Horst; Wu, Ying-Ta; Zimmermann, Marc
Virtual screening on large scale grids
(2007) in Parallel computing
Caprera, Andrea; Lazzari, Barbara; Stella, Alessandra; Merelli, Ivan; Caetano, Alexandre R.; Mariani, Paola
GoSh: a web-based database for goat and sheep EST sequences
(2007) in Bioinformatics (Oxf., Print)
Caprera, A.; Lazzari, B.; Stella, A.; Merelli, I.; Caetano, A. R.; Mariani, P.
GoSh: a goat and sheep ESTs database
(2007) in Italian Journal of Animal Science (Testo stamp.)
D'Agostino, Daniele; Clematis, Andrea; Merelli, Ivan; Milanesi, Luciano; Coloberti, Matteo
A Grid Service based parallel molecular surface reconstruction system
(2007) 16th Euromicro International Conference on Parallel, Distributed and network-based Processing (PDP 2008)
Federica Viti, Ivan Merelli, Andrea Caprera, Barbara Lazzari, Luciano Milanesi
Ontology-based image description oriented to Tissue MicroArray experiments design
(2007) Nettab 2007, Pisa
Antonella Galizia, Federica Viti, Daniele DAgostino,Ivan Merelli, Luciano Milanesi, Andrea Clematis
Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing
(2007) ParCo2007, Aachen
Lazzari B., Caprera A., Vecchietti A., Merelli I., Barale F., Milanesi L., Stella A., Pozzi C
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
(2007) BITS2007, Napoli
Milanesi L., Merelli I
High Performance GRID Based Implementation for Genomics and Protein Analysis
(2007) HealthGrid2007, Ginevra
Alfieri, Roberta; Mosca, Ettore; Merelli, Ivan; Milanesi, Luciano
Parameter Estimation for Cell Cycle Ordinary Differential Equation (ODE) Models using a Grid Approach
(2007) HealthGrid2007, Ginevra
Trombetti, Gabriele A.; Merelli, Ivan; Orro, Alessandro; Milanesi, Luciano
BGBlast: A BLAST Grid Implementation with Database Self-Updating and Adaptive Replication
(2007) HealthGrid2007, Ginevra
Viti, Federica; Merelli, Ivan; Galizia, Antonella; D'Agostino, Daniele; Clematis, Andrea; Milanesi, Luciano
Tissue MicroArray: a Distributed Grid Approach for Image Analysis
(2007) HealthGrid2007, Ginevra
Luciano MILANESI, Ettore MOSCA, Alessandro ORRO, Ivan MERELLI
ICT and GRID computing for Bioinformatics and Systems Biology
(2007) 1st SysBioHealth, Milano
Ettore MOSCA, Roberta ALFIERI, Ivan MERELLI, Luciano MILANESI
Parameters estimation for cell cycle ODE models using high performance computing
(2007) 1st SysBioHealth, Milano
Daniele DAgostino, Ivan Merelli, Andrea Clematis, Luciano Milanesi, Alessandro Orro
A Parallel Workflow for the Reconstruction of Molecular Surfaces
(2007) PraCo2007, Aachen
Mosca E., Merelli I., Milanesi L., Alfieri R
Development of a systems biology infrastructure for mathematical modelling and parameter estimation
(2007) BITS2007, Napoli
DUrsi P. Chiappori F., Salvi E., Merelli I., Rovida E., Milanesi L
Grid docking simulation for comparative ligand binding of Neurominidase structures
(2007) BITS2007, Napoli
Jacq, Nicolas; Breton, Vincent; Chen, Hsin Yen; Ho, Li Yung; Hofmann, Martin; Lee, Hurng Chun; Legré, Yannick; Lin, Simon C.; Maaß, Astrid; Medernach, Emmanuel; Merelli, Ivan; Milanesi, Luciano; Rastelli, Giulio; Reichstadt, Matthieu; Salzemann, Jean; Schwichtenberg, Horst; Sridhar, Mahendrakar; Kasam, Vinod; Kasam, Vinod; Wu, Ying Ta; Zimmermann, Marc
Grid-enabled high throughput virtual screening
(2007) in , 2007
Milanesi, L.; Merelli, I.
High Performance GRID Based Implementation for Genomics and Protein Analysis
(2006) in Studies in health technology and informatics (Print)
G.A. Trombetti, I. Merelli, L. Milanesi.
High performance cDNA sequence analysis using grid technology.
(2006) in Journal of parallel and distributed computing (Print)
Lee, Hurng-Chun; Salzemann, Jean; Jacq, Nicolas; Chen, Hsin-Yen; Ho, Li-Yung; Merelli, Ivan; Milanesi, Luciano; Breton, Vincent; Lin, Simon C.; Wu, Ying-Ta
Grid-enabled high-throughput in silico screening against influenza a neuraminidase
(2006) in IEEE transactions on nanobioscience
Nicolas Jacq, Vincent Breton, Hsin-Yen Chen, Li-Yung Ho, Martin Hofmann, Hurng-Chun Lee, Yannick Legré, Simon C. Lin, Astrid Maaß, Emmanuel Medernach, Ivan Merelli, Luciano Milanesi, Giulio Rastelli, Matthieu Reichstadt, Jean Salzemann, Horst Schwichtenbe
Distributed, High-Performance and Grid Computing in Computational Biology
(2006) GCCB2006, Eilat (Israele)
Milanesi L., Alfieri R., Merelli I.
A Data Mining Approach for Yeast and Mammalian Cell Cycle Models in Systems Biology.
(2006) International Conference on Bioinformatics - INCOB2006, New Delhi, India.
Milanesi L., Alfieri R., Merelli I
HCCdb: Data Mining System for Human Cell Cycle Gene
(2006) The Fifth International Conference in Bioinformatics of Genome Regulation and Structure (BGRS2006), Novosibisk Russia
Merelli I., DAgostino D., Clematis A., Milanesi L.
Analysis system for Protein Surface Recognition.
(2006) BITS2006, Bologna, Italy
Milanesi L. Alfieri R. Merelli I.
Developement of a data mining system for human cell cycle data analysis
(2006) BITS2006, Bologna
Milanesi L., Breton V., Suhai S., Liò P., Liuni S., Jacq N., Maggi G., Legre Y., Barbera B., Meloni G., Arlandini C., Sanger M., Merelli I., Andreas G., Bishop C., Beltrame F., Porro I., Orro A., Morra G., Trombetti G., Mazzuccato M.
BioinfoGRID: EU Bioinfomatics GRID Project
(2006) BITS2006, Bologna
Viti F., Merelli I., Porro I., Papadimitropoulos A., Milanesi L.
Valuation study of available genomic data storage platforms
(2006) BITS2006, Bologna, Italy
Merelli I., Pattini L., Cerutti S., Milanesi L.
Amino acids patterns in protein domain functionality analysis.
(2006) in , 2006
Milanesi, L.; Merelli, I.
High performance GRID based implementation for genomics and protein analysis
(2006) in , 2006
Pattini, L; Merelli, I; Cerutti, S; Milanesi, L
Representation and modeling of protein surface determinants
(2005) in IEEE transactions on nanobioscience
Merelli I.; Morra G.; D'Agostino D.; Clematis A.; Milanesi L.
High performance workflow implementation for protein surface characterization using grid technology
(2005) in BMC bioinformatics
I. Merelli, L. Milanesi, D. D'Agostino, and A. Clematis
Using parallel isosurface extraction in superficial molecular modeling
(2005) Distributed Frameworks for Multimedia Applications, 2005. DFMA '05
Merelli I., Landenna M., Milanesi L.
Biological database access and integration using Web Services in GRID technology
(2005) BITS 2005, Milano
Morra G., Merelli I., Koert U., Knapp E.W., Milanesi L
Molecular dynamics simulations of a small membrane channel: A distributed computing approach
(2005) BITS 2005, Milano
Merelli I, Morra G, Milanesi L
Bioinformatics Workflow using ASSIST on GRID
(2005) NETTAB 2005, Napoli
Merelli I, Milanesi L
High Performance Implementation for Protein Domain Search using the GRID Platform
(2005) Virtual Genomics Conference, Washington DC, USA
Merelli I., Milanesi L., DAgostino D., Clematis A., Zanneschi M, Danelutto M
Using Parallel Isosurface Extraction in Superficial Molecular Modeling
(2005) DFMA 2005, Besançon, France
Merelli I, Milanesi L, Pattini L, Cerutti S
Amino Acids Surface Patterns in Protein Domain functionality Analysis
(2005)
Milanesi L., Merelli I., Pattini L., Cerutti S
Representation and Modelling of Protein Surface Determinants
(2004) The Fourth Iternational Conference in Bioinformatics of Genome Regulation and Structure, Novosibisk Russia
Milanesi L., Merelli I.
Modelling of protein surface to identify and analyze functional determinants using GRID technologies
(2004) AgentLink III, Technical Forum I, Roma