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Ceccarani, Camilla; Foschi, Claudio; Parolin, Carola; D'Antuono, Antonietta; Gaspari, Valeria; Consolandi, Clarissa; Laghi, Luca; Camboni, Tania; Vitali, Beatrice; Severgnini, Marco; Marangoni, Antonella
Diversity of vaginal microbiome and metabolome during genital infections
(2019) in Scientific reports (Nature Publishing Group)
Elisa Borghi, PhD,1 Valentina Massa, PhD,1 Marco Severgnini, PhD,2 Grazia Fazio, PhD,3 Laura Avagliano, MD,1 Elena Menegola, PhD,4 Gaetano Pietro Bulfamante, MD,1 Giulia Morace, PhD,1 and Francesca Borgo, PhD1
Antenatal Microbial Colonization of Mammalian Gut
(2019) in Reproductive sciences (Thousand Oaks, Calif.)
Ceccarani, Camilla; Marangoni, Antonella; Severgnini, Marco; Camboni, Tania; Laghi, Luca; Gaspari, Valeria; D'Antuono, Antonietta; Foschi, Claudio; Re, Maria Carla; Consolandi, Clarissa
Rectal Microbiota Associated With Chlamydia trachomatis and Neisseria gonorrhoeae Infections in Men Having Sex With Other Men
(2019) in Frontiers in cellular and infection microbiology
Bassanini Giulia, Ceccarani Camilla, Borgo Francesca, Severgnini Marco, Rovelli Valentina, Morace Giulia, Verduci Elvira and Borghi, Elisa
Phenylketonuria Diet Promotes Shifts in Firmicutes Populations
(2019) in Frontiers in cellular and infection microbiology
Barichella M, Severgnini M, Cilia R, Cassani E, Bolliri C, Caronni S, Ferri V, Cancello R, Ceccarani C, Faierman S, Pinelli G, De Bellis G, Zecca L, Cereda E, Consolandi C, Pezzoli G.
Unraveling gut microbiota in Parkinson's disease and atypical parkinsonism
(2019) in Movement disorders
D'Amico, Federica; Soverini, Matteo; Zama, Daniele; Consolandi, Clarissa; Severgnini, Marco; Prete, Arcangelo; Pession, Andrea; Barone, Monica; Turroni, Silvia; Biagi, Elena; Brigidi, Patrizia; Masetti, Riccardo; Rampelli, Simone; Candela, Marco
Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transplantation
(2019) in Scientific reports (Nature Publishing Group)
Elena Biagi 1, Daniele Zama 2, Simone Rampelli 1, Silvia Turroni 1, Patrizia Brigidi 1, Clarissa Consolandi 3, Marco Severgnini 3, Eleonora Picotti 2, Pietro Gasperini 2, Pietro Merli 4, Nunzia Decembrino 5, Marco Zecca 5, Simone Cesaro 6, Maura Faraci 7, Arcangelo Prete 2, Franco Locatelli 4, Andrea Pession 2, Marco Candela 1 and Riccardo Masetti 2
Early gut microbiota signature of aGvHD in children given allogeneic hematopoietic cell transplantation for hematological disorders
(2019) in BMC medical genomics
Corrado L.; Genovese L.; Mangano E.; Croce R.; Di Pierro A.; Geraci F.; Bordoni R.; D'Aurizio R.; Barizzone N.; De Marchi F.; Mazzini L.; De Bellis G.; Manzini G.; Severgnini M.; Pellegrini M.; D'Alfonso S.
Analysis of DNA tandem repeats in ALS from Whole Genome Sequencing: Role of FRA10Ac1 gene repeat expansion in ALS
(2019) 52nd European Society of Human Genetics (ESHG) Conference, Gothenburg, 2019
Cremonesi P, Morandi S, Ceccarani C, Cologna N, Goss A, Severgnini M, Mazzucchi M, Partel E, Castiglioni B, Tamburini A, Zanini L, Brasca M
Effect of the use of chlorine usage in milking equipment cleaning procedures on raw milk microbiota
(2019) 8th Congress of European Microbiologist (FEMS), Glasgow (UK), 7-11/07/2019
Battelli G., Cremonesi P., Ceccarani C., Cologna N., Goss A., Severgnini M., Mazzucchi M., Partel E., Morandi S., Castiglioni B., Tamburini A., Zanini L., Brasca M.
Raw milk microbiota modifications as affected by different cleaning procedures: the Trentingrana case. Interbational Conference on raw milk.
(2019) International conference on raw milk., Valencia, Spain, 24-25/10/2019
Fabiana Canini 1,2, Laura Zucconi 1, József Geml 2,3, Luigi Paolo D'Acqui 4, Marco Severgnini 5, Giacomo Mele 6, Valentina Raimondi 7, Lorenzo Palombi 7, Clarissa Consolandi 5, Tania Camboni 5, Silvano Onofri 1, Laura Selbmann 1,8, Alessia Cassaro 1, Claudia Pacelli 1,9, Stefano Ventura 4,10
Antarctic Dry Valleys melt water systems analogues of Martian gullies: characterization of microbial communities and soil properties
(2019) EANA 2019: 19th EANA Astrobiology Conference, Orléans, France, 3rd-6th September 2019
Cremonesi, Paola; Ceccarani, Camilla; Curone, Giulio; Severgnini, Marco; Pollera, Claudia; Bronze, Valerio; Riva, Federica; Addis, Maria Filippa; Filipe, Joel; Amadori, Massimo; Trevisi, Erminio; Vigo, Daniele; Moroni, Paolo; Castiglioni, Bianca
Milk microbiome diversity and bacterial group prevalence in a comparison between healthy Holstein Friesian and Rendena cows
(2018) in PloS one
Gemma Macchia, Marco Severgnini, Stefania Purgato, Doron Tolomeo, Hilen Casciaro, Ingrid Cifola, Alberto L'Abbate, Anna Loverro, Orazio Palumbo, Massimo Carella, Laurence Bianchini, Giovanni Perini, Gianluca De Bellis, Fredrik Mertens, Mariano Rocchi and Clelia T. Storlazzi
The Hidden Genomic and Transcriptomic Plasticity of Giant Marker Chromosomes in Cancer
(2018) in Genetics (Austin Tex., Online)
Parolin C.; Foschi C.; Laghi L.; Zhu C.; Banzola N.; Gaspari V.; D'Antuono A.; Giordani B.; Severgnini M.; Consolandi C.; Salvo M.; Cevenini R.; Vitali B.; Marangoni A.
Insights into vaginal bacterial communities and metabolic profiles of Chlamydia trachomatis infection: Positioning between eubiosis and dysbiosis
(2018) in Frontiers in microbiology
Borgo F 1, Garbossa S 2, Riva A 1,3, Severgnini M 4, Luigiano C 2, Benetti A 2, Pontiroli AE 1,2, Morace G 1, Borghi E 1.
Body Mass Index and Sex Affect Diverse Microbial Niches within the Gut
(2018) in Frontiers in microbiology
Genovese L.M.; Geraci F.; Corrado L.; Mangano E.; D'Aurizio R.; Bordoni R.; Severgnini M.; Manzini G.; De Bellis G.; D'Alfonso S.; Pellegrini M.
A census of tandemly repeated polymorphic loci in genic regions through the comparative integration of human genome assemblies
(2018) in Frontiers in genetics
Cremonesi P.; Conte G.; Severgnini M.; Turri F.; Monni A.; Capra E.; Rapetti L.; Colombini S.; Chessa S.; Battelli G.; Alves S.P.; Mele M.; Castiglioni B.
Evaluation of the effects of different diets on microbiome diversity and fatty acid composition of rumen liquor in dairy goat
(2018) in Animal (Cambridge. Print)
Severgnini, Marco; Lazzari, Barbara; Lazzari, Barbara; Capra, Emanuele; Chessa, Stefania; Luini, Mario; Bordoni, Roberta; Castiglioni, Bianca; Ricchi, Matteo; Cremonesi, Paola
Genome sequencing of Prototheca zopfii genotypes 1 and 2 provides evidence of a severe reduction in organellar genomes
(2018) in Scientific reports (Nature Publishing Group)
Cindy Buffone1, Alicia Martinez-Lopez1, Thomas Fricke1, Silvana Opp1, Marco Severgnini2, Ingrid Cifola2, Luca Petiti2, Stella Frabetti3, Katarzyna Skorupka4, Kaneil K. Zadrozny4, Barbie K. Ganser-Pornillos4, Owen Pornillos4, Francesca Di Nunzio3+ and Felipe Diaz-Griffero1+
Nup153 Unlocks the Nuclear Pore Complex for HIV-1 Nuclear Translocation in Non-dividing Cells
(2018) in Journal of virology (Online)
Cremonesi P., Ceccarani C., Cologna N., Goss A., Severgnini M., Mazzucchi M., Partel E., Morandi S., Castiglioni B., Tamburini A., Zanini L., Brasca M.
Effect of the use of chlorine usage in milking equipment cleaning procedures on raw milk microbiota
(2018) International Bovine Mastitis Conference., Milano, 11-13/06/2018
Paola Cremonesi1 & Camilla Ceccarani2,3, Giulio Curone4, Marco Severgnini2, Claudia Pollera4, Valerio Bronzo4, Federica Riva4, Maria Filippa Addis4, Joel Filipe4, Massimo Amadori5, Erminio Trevisi6, Daniele Vigo4, Paolo Moroni4,7, Bianca Castiglioni1
Confronto tra la biodiversità del microbioma del latte delle razze Frisona Italiana e Rendena
(2018) 6° Congresso lattiero-caseario Aitel. Latte e derivati: ricerca, innovazione e valorizzazione, Trento, 20/09/2018
Morandi S., Cremonesi P., Ceccarani C., Cologna N., Goss A., Severgnini M., Mazzucchi M., Partel E., Castiglioni B., Tamburini A., Zanini L., Brasca M.
Effetto dell'impiego di cloro nella pulizia dell'impianto di mungitura sul microbiota del latte crudo
(2018) 6° Congresso lattiero-caseario Aitel. Latte e derivati: ricerca, innovazione e valorizzazione, Trento, 20/09/2018
Paola Cremonesi1 & Federica Turri1, Gustavo Gandini2, Giovanna Battelli3, Marco Severgnini4, Flavia Pizzi1
Microbiota characterization and volatile and non-volatile lipophilic fraction analysis of Bitto Storico cheese produced in six different Alpine pastures.
(2017) FEMS 7th Congress of European Microbiologist, Valencia, 9-13/07/2017
Romano, Oriana; Cifola, Ingrid; Poletti, Valentina; Severgnini, Marco; Peano, Clelia; De Bellis, Gianluca; Mavilio, Fulvio; Miccio, Annarita
Retroviral Scanning: Mapping MLV Integration Sites to Define Cell-specific Regulatory Regions.
(2017) in Journal of visualized experiments
Quercia, Sara; Turroni, Silvia; Fiori, Jessica; Soverini, Matteo; Rampelli, Simone; Biagi, Elena; Castagnetti, Andrea; Consolandi, Clarissa; Severgnini, Marco; Pianesi, Mario; Fallucca, Francesco; Pozzilli, Paolo; Brigidi, Patrizia; Candela, Marco
Gut microbiome response to short-term dietary interventions in reactive hypoglycemia subjects.
(2017) in Diabetes/metabolism research and reviews (Online)
Majlessi, L.; Sayes, F.; Bureau, J-F; Pawlik, A.; Michel, V.; Jouvion, G.; Huerre, M.; Severgnini, M.; Consolandi, C.; Peano, C.; Brosch, R.; Touati, E.; Leclerc, C.
Colonization with Helicobacter is concomitant with modified gut microbiota and drastic failure of the immune control of Mycobacterium tuberculosis
(2017) in Mucosal immunology
Parolin, Carola; Giordani, Barbara; Palomino, Rogers Alberto Nahui; Biagi, Elena; Severgnini, Marco; Consolandi, Clarissa; Caredda, Giada; Storelli, Stefano; Strohmenger, Laura; Vitali, Beatrice
Design and validation of a DNA-microarray for phylogenetic analysis of bacterial communities in different oral samples and dental implants
(2017) in Scientific reports (Nature Publishing Group)
A ?Abbate, D Tolomeo, I Cifola, M Severgnini, A Turchiano, B Augello, G Squeo, P D´Addabbo, D Traversa, G Daniele, A Lonoce, M Pafundi, M Carella, O Palumbo, A Dolnik, D Muehlematter, J Schoumans, N Van Roy, G De Bellis, G Martinelli, G Merla, L Bullinger, C Haferlach & C T Storlazzi
MYC-containing amplicons in acute myeloid leukemia: Genomic structures, evolution, and transcriptional consequences
(2017) in Leukemia
Mennonna D.; Maccalli C.; Romano M.C.; Garavaglia C.; Capocefalo F.; Bordoni R.; Severgnini M.; De Bellis G.; Sidney J.; Sette A.; Gori A.; Longhi R.; Braga M.; Ghirardelli L.; Baldari L.; Orsenigo E.; Albarello L.; Zino E.; Fleischhauer K.; Mazzola G.; Ferrero N.; Amoroso A.; Casorati G.; Parmiani G.; Dellabona P.
T cell neoepitope discovery in colorectal cancer by high throughput profiling of somatic mutations in expressed genes
(2017) in Gut
Borghi, Elisa; Borgo, Francesca; Severgnini, Marco; Savini, Miriam Nella; Casiraghi, Maria Cristina; Vignoli, Aglaia
Rett Syndrome: A Focus on Gut Microbiota
(2017) in International journal of molecular sciences (Online)
Turroni, Silvia; Rampelli, Simone; Biagi, Elena; Consolandi, Clarissa; Severgnini, Marco; Peano, Clelia; Quercia, Sara; Soverini, Matteo; Carbonero, Franck G.; Bianconi, Giovanna; Rettberg, Petra; Canganella, Francesco; Brigidi, Patrizia; Candela, Marco
Temporal dynamics of the gut microbiota in people sharing a confined environment, a 520-day ground-based space simulation, MARS500
(2017) in Mucosal immunology
Puccio, Simone; Grillo, Giorgio; Licciulli, Flavio; Severgnini, Marco; Liuni, Sabino; Bicciato, Silvio; De Bellis, Gianluca; Ferrari, Francesco; Peano, Clelia
WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes.
(2017) in Nucleic acids research
F. Turri & P. Cremonesi, G. Gandini, G. Battelli, M. Severgnini, F. Pizzi
Identification of Bacterial Biodiversity and Volatile Fraction of Bitto Storico Cheese in Different Alpine Pasture Areas
(2017) 12th International Meeting on Mountain Cheese, 20/06/2017, 22/06/2017
G. Curone1, P. Cremonesi2, F. Riva1, M.F. Addis3, L. Turin1, C. Pollera1, M. Severgnini4, J. Filipe1, D. Calonzi2, D. Vigo1, P. Moroni1, V. Bronzo1, B. Castiglioni2
STUDY OF BOVINE MILK MICROBIOTA BIODIVERSITY IN AUTOCTONOUS ITALIAN BREEDS
(2016) 4th World Congress on Targeting Microbiota, 17/10/2016, 19/10/2016
Cavazza, Alessia; Miccio, Annarita; Romano, Oriana; Petiti, Luca; Tagliazucchi, Guidantonio Malagoli; Peano, Clelia; Severgnini, Marco; Rizzi, Ermanno; De Bellis, Gianluca; Bicciato, Silvio; Mavilio, Fulvio
Dynamic Transcriptional and Epigenetic Regulation of Human Epidermal Keratinocyte Differentiation
(2016) in Stem Cell Reports
Turroni, Silvia; Rampelli, Simone; Centanni, Manuela; Schnorr, Stephanie L.; Consolandi, Clarissa; Severgnini, Marco; Peano, Clelia; Soverini, Matteo; Falconi, Mirella; Crittenden, Alyssa N.; Henry, Amanda G.; Brigidi, Patrizia; Candela, Marco
Enterocyte-Associated Microbiome of the Hadza Hunter-Gatherers
(2016) in Frontiers in microbiology
Candela M.; Biagi E.; Soverini M.; Consolandi C.; Quercia S.; Severgnini M.; Peano C.; Turroni S.; Rampelli S.; Pozzilli P.; Pianesi M.; Fallucca F.; Brigidi P.
Modulation of gut microbiota dysbioses in type 2 diabetic patients by macrobiotic Ma-Pi 2 diet
(2016) in British journal of nutrition
Biagi E, Franceschi C, Rampelli S, Severgnini M, Ostan R, Turroni S, Consolandi C, Quercia S, Scurti M, Monti D, Capri M, Brigidi P, Candela M
Gut Microbiota and Extreme Longevity
(2016) in Current biology
Zulian A, Cancello R, Cesana E, Rizzi E, Consolandi C, Severgnini M, Panizzo V, Di Blasio AM, Micheletto G, Invitti C.
Adipose tissue microbiota in humans: an open issue
(2016) in International journal of obesity (Online)
Soverini M, Quercia S, Biancani B, Furlati S, Turroni S, Biagi E, Consolandi C, Peano C, Severgnini M, Rampelli S, Brigidi P, Candela M.
The bottlenose dolphin (Tursiops truncatus) fecal microbiota
(2016) in FEMS microbiology, ecology (print)
Romano, Oriana; Peano, Clelia; Tagliazucchi, Guidantonio Malagoli; Petiti, Luca; Poletti, Valentina; Cocchiarella, Fabienne; Rizzi, Ermanno; Severgnini, Marco; Cavazza, Alessia; Rossi, Claudia; Pagliaro, Pasqualepaolo; Ambrosi, Alessandro; Ferrari, Giuliana; Bicciato, Silvio; De Bellis, Gianluca; Mavilio, Fulvio; Miccio, Annarita
Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment
(2016) in Scientific reports (Nature Publishing Group)
F. Turri, P. Cremonesi, G. Gandini, G. Battelli, M. Severgnini, F. Pizzi
Caratterizzazione microbica mediante Next Generation Sequencing e analisi della frazione lipofila volatile e non volatile del formaggio Bitto storico in funzione dell'alpeggio
(2016) 11° Convegno Nazionale sulla Biodiversità, Matera, 9-10/06/2016
Paola CREMONESI1*, Federica RIVA2, Maria Filippa ADDIS3, Lauretta TURIN2, Claudia POLLERA2, Marco SEVERGNINI4, Joel FILIPE2, Dario CALONZI1, Giulio CURONE2, Daniele VIGO2, Paolo MORONI2, Valerio BRONZO2, Bianca CASTIGLIONI1
Studio della biodiversità del microbiota del latte bovino per la valorizzazione delle razze autoctone italiane
(2016) 5° Congresso dell'Associazione Italiana dei tecnici del Latte (AITeL), LATTE E DERIVATI: RICERCA, INNOVAZIONE E VALORIZZAZIONE, Bari, 09/07/2016
Paola Cremonesi1, Federica Riva2, Emanuele Capra1, Vittorio Tedde3, Maria Filippa Addis3, Lauretta Turin2, Claudia Pollera2, Marco Severgnini4, Joel Felipe Soares2, Giulio Curone2, Noemi Visconti2, Daniele Vigo2 and Bianca Castiglioni1
Milk's microbiota during the periparturient period in holstein cows: possible implication on animal health and milk quality
(2015) 6th International Symposium on Animal Functional Genomics, Piacenza, 27-29 Luglio 2015
P. Cremonesi1, E. Capra1, F. Turri1, M. Severgnini2, G. Conte3, L. Rapetti4, S. Chessa1, B. Castiglioni1
EFFECTS OF LINSEED AND HEMP SEEDS DIET SUPPLEMENTATION ON CAPRINE RUMEN BACTERIAL DIVERSITY
(2015) 6th Congress of European Microbiologists, Maastricht, The Nederlands, 7-11 June 2015
Paola Cremonesi,1 & Giuseppe Conte,2 Emanuele Capra,1 Federica Turri,1 Marco Severgnini,3 Luca Rapetti,4 Stefania Colombini,4 Stefania Chessa,1 Marcello Mele,2 Bianca Castiglioni.1
Evaluation of the effects of different diets on bacterial diversity and on fatty acid composition in goat rumen.
(2015) in Italian Journal of Animal Science (Testo stamp.)
Lelek, Mickaël; Casartelli, Nicoletta; Pellin, Danilo; Rizzi, Ermanno; Souque, Philippe; Severgnini, Marco; Di Serio, Clelia; Fricke, Thomas; Diaz-Griffero, Felipe; Zimmer, Christophe; Charneau, Pierre; Di Nunzio, Francesca
Chromatin organization at the nuclear pore favours HIV replication
(2015) in Nature communications
Cruciani, Federica; Biagi, Elena; Severgnini, Marco; Consolandi, Clarissa; Calanni, Fiorella; Donders, Gilbert; Brigidi, Patrizia; Vitali, Beatrice
Development of a Microarray-Based Tool To Characterize Vaginal Bacterial Fluctuations and Application to a Novel Antibiotic Treatment for Bacterial Vaginosis
(2015) in Antimicrobial agents and chemotherapy (Print)
Biagi, E.; Zama, D.; Nastasi, C.; Consolandi, C.; Fiori, J.; Rampelli, S.; Turroni, S.; Centanni, M.; Severgnini, M.; Peano, C.; De Bellis, G.; Basaglia, G.; Gotti, R.; Masetti, R.; Pession, A.; Brigidi, P.; Candela, M.
Gut microbiota trajectory in pediatric patients undergoing hematopoietic SCT
(2015) in Bone marrow transplantation (Basingstoke)
Rampelli S, Schnorr SL, Consolandi C, Turroni S, Severgnini M, Peano C, Brigidi P, Crittenden AN, Henry AG, Candela M.
Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota.
(2015) in Current biology
Fazio, Grazia (a); Daniele, Giulia (b); Cazzaniga, Valeria (a); Impera, Luciana (c); Severgnini, Marco (d); Iacobucci, Ilaria (e); Galbiati, Marta (a); Leszl, Anna (f); Cifola, Ingrid (d); De Bellis, Gianluca (d); Bresciani, Paola (g); Martinelli, Giovanni (e); Basso, Giuseppe (f); Biondi , Andrea (a); Storlazzi, Clelia Tiziana (b); Cazzaniga, Giovanni (a)
Three novel fusion transcripts of the paired box 5 gene in B-cell precursor acute lymphoblastic leukemia.
(2015) in Haematologica (Roma)
Consolandi, Clarissa; Turroni, Silvia; Emmi, Giacomo; Severgnini, Marco; Fiori, Jessica; Peano, Clelia; Biagi, Elena; Grassi, Alessia; Rampelli, Simone; Silvestri, Elena; Centanni, Manuela; Cianchi, Fabio; Gotti, Roberto; Emmi, Lorenzo; Brigidi, Patrizia; Bizzaro, Nicola; De Bellis, Gianluca; Prisco, Domenico; Prisco, Domenico; Candela, Marco; D'Elios, Mario M.; D'Elios, Mario M.
Behçet's syndrome patients exhibit specific microbiome signature
(2015) in Autoimmunity reviews
C. Consolandi, P. Cremonesi, M. Severgnini and B. Castiglioni
Detection of Foodborne Pathogens Using DNA Arrays
(2015) Elsevier, Amsterdam (Paesi Bassi), 2015
S.Chessa1 & P.Cremonesi1 , E.Capra1, F.Turri1, B.Lazzari1, L.Rapetti2, S.Colombini2, G.Battelli3, M.Severgnini4, B.Castiglioni1
Study of the effects of diet supplementation on milk fatty acids composition, rumen bacterial diversity and mammary gland transcriptome in Alpine lactating goats
(2015) L'innovazione scientifica per la nutrizione, Lodi, 16 Ottobre 2015
Nastasi, Claudia; Zama, Daniele; Biagi, Elena; Candela, Marco; Consolandi, Clarissa; Peano, Clelia; Severgnini, Marco; Rampelli, Simone; Basaglia, Giulia; Fiori, Jessica; Gotti, Roberto; Masetti, Riccardo; Prete, Arcangelo; Brigidi, Patrizia; Pession, Andrea
GUT Microbiota Reconstitution as Predictor Factor for Acute Graft Versus Host Disease (AGVHD) in Children Undergoing Allogeneic Haematopoietic Stem Cell Transplantation (AHSCT)
(2014) in Journal of pediatric hematology/oncology (Print)
Fazio, Grazia; Severgnini, Marco; Cifola, Ingrid; Bungaro, Silvia; Biondi, Andrea; De Bellis, Gianluca; Cazzaniga, Giovanni
Structural Variations Identified By Whole Transcriptome Sequencing (RNA-Seq) in Childhood ALL with Different Response to Therapy
(2014) in Blood
L'Abbate, Alberto; Macchia, Gemma; D'Addabbo, Pietro; Lonoce, Angelo; Tolomeo, Doron; Trombetta, Domenico; Kok, Klaas; Bartenhagen, Christoph; Whelan, Christopher W.; Palumbo, Orazio; Severgnini, Marco Centanni Marco; Cifola, Ingrid; Dugas, Martin; Carella, Massimo; De Bellis, Gianluca; Rocchi, Mariano; Carbone, Lucia; Storlazzi, C. T.
Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer
(2014) in Nucleic acids research
Fondi, Marco (a); Orlandini, Valerio (a); Corti, Giorgio(b); Severgnini, Marco(b); Galardini, Marco (a); Pietrelli, Alessandro (b); Fuligni, Fabio(b); Iacono, Michele(b); Rizzi, Ermanno(b); De Bellis, Gianluca(b); Fani, Renato(a)
Enly: Improving Draft Genomes through Reads Recycling.
(2014) in Journal of Genomics
Saa, Danielle Taneyo; Turroni, Silvia; Serrazanetti, Diana Isabella; Rampelli, Simone; Maccaferri, Simone; Candela, Marco; Severgnini, Marco; Simonetti, Emanuela; Brigidi, Patrizia; Gianotti, Andrea
Impact of Kamut (R) Khorasan on gut microbiota and metabolome in healthy volunteers
(2014) in Food research international
Bohme K.; Cremonesi P.; Severgnini M.; Villa T.G.; Fernandez-No I.C.; Barros-Velazquez J.; Castiglioni B.; Calo-Mata P.
Detection of food spoilage and pathogenic bacteria based on ligation detection reaction coupled to flow-through hybridization on membranes
(2014) in BioMed Research International (Print)
Biagi, Elena (a); Candela, Marco (a); Centanni, Manuela (a); Consolandi, Clarissa (b); Rampelli, Simone (a); Turroni, Silvia (a); Severgnini, Marco (b); Peano, Clelia (b); Ghezzo, Alessandro (c); Scurti, Maria (d); Salvioli, Stefano (d); Franceschi, Claudio (d); Brigidi, Patrizia (a)
Gut Microbiome in Down Syndrome
(2014) in PloS one
Moiani, Arianna; Suerth, Julia Debora; Gandolfi, Francesco; Rizzi, Ermanno; Severgnini, Marco; De Bellis, Gianluca; Schambach, Axel; Mavilio, Fulvio
Genome-wide analysis of alpharetroviral integration in human hematopoietic stem/progenitor cells.
(2014) in Genes (Oxf.)
Schnorr, Stephanie L.; Candela, Marco; Rampelli, Simone; Centanni, Manuela; Consolandi, Clarissa; Basaglia, Giulia; Turroni, Silvia; Biagi, Elena; Peano, Clelia; Severgnini, Marco; Fiori, Jessica; Gotti, Roberto; De Bellis, Gianluca; Luiselli, Donata; Brigidi, Patrizia; Mabulla, Audax; Marlowe, Frank; Henry, Amanda G.; Crittenden, Alyssa N.
Gut microbiome of the Hadza hunter-gatherers
(2014) in Nature communications
Centanni, Manuela; Turroni, Silvia; Rampelli, Simone; Biagi, Elena; Quercia, Sara; Consolandi, Clarissa; Severgnini, Marco; Brigidi, Patrizia; Candela, Marco
Bifidobacterium animalis ssp lactis BI07 modulates the tumor necrosis factor alpha-dependent imbalances of the enterocyte-associated intestinal microbiota fraction
(2014) in FEMS microbiology letters
Fazio, Grazia; Storlazzi, Clelia Tiziana; Severgnini, Marco; Cazzaniga, Valeria; Impera, Luciana; Daniele, Giulia; Iacobucci, Ilaria; Galbiati, Marta; Leszl, Anna; Bungaro, Silvia; Cifola, Ingrid; De Bellis, Gianluca; Martinelli, Giovanni; Basso, Giuseppe; Biondi, Andrea; Cazzaniga, Giovanni
Novel Chimeric Transcripts Involving PAX5 in B-Cell Precursor ALL
(2013) in Blood
Moiani, A.; Suerth, J.; Miccio, A.; Rizzi, E.; Severgnini, M.; De Bellis, G.; Schambach, A.; Mavilio, F.
Self-inactivating alpharetroviral vectors have a low genotoxic integration profile in human CD34(+) hematopoietic progenitor cells
(2013) in Human gene therapy
Rumi, Elisa; Pietra, Daniela; Guglielmelli, Paola; Bordoni, Roberta; Casetti, Ilaria; Milanesi, Chiara; Sant'Antonio, Emanuela; Ferretti, Virginia; Pancrazzi, Alessandro; Rotunno, Giada; Severgnini, Marco; Pietrelli, Alessandro; Astori, Cesare; Fugazza, Elena; Pascutto, Cristiana; Boveri, Emanuela; Passamonti, Francesco; De Bellis, Gianluca; Vannucchi, Alessandro; Cazzola, Mario
Acquired copy-neutral loss of heterozygosity of chromosome 1p as a molecular event associated with marrow fibrosis in MPL-mutated myeloproliferative neoplasms
(2013) in Blood
Centanni, Manuela; Turron, Silvia; Consolandi, Clarissa; Rampelli, Simone; Peano, Clelia; Severgnini, Marco; Biagi, Elena; Caredda, Giada; De Bellis, Gianluca; Brigidi, Patrizia; Candela, Marco
The Enterocyte-Associated Intestinal Microbiota of Breast-Fed Infants and Adults Responds Differently to a TNF-alpha-Mediated Pro-Inflammatory Stimulus
(2013) in PloS one
Rampelli S(a), Candela M (a), Severgnini M (b), Biagi E (a), Turroni S (a), Roselli M (c), Carnevali P (d), Donini L (e), Brigidi P (a)
A probiotics-containing biscuit modulates the intestinal microbiota in the elderly
(2013) in The Journal of nutrition, health & aging
Centanni M (a), Turroni S (a), Biagi E (a), Severgnini M (b), Consolandi C (b), Brigidi P (a), Candela M (a)
A novel combined approach based on HTF-Microbi. Array and qPCR for a reliable characterization of the Bifidobacterium-dominated gut microbiota of breast-fed infants
(2013) in FEMS microbiology letters
Di Nunzio F (a), Fricke T (b), Miccio A (c), Valle-Casuso JC (b), Perez P (b), Souque P (a), Rizzi E (d), Severgnini M (d), Mavilio F (c), Charneau P (a), Diaz-Griffero, F (b)
Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication
(2013) in Virology (N.Y.N.Y., Print)
Moiani, Arianna and Miccio, Annarita and Rizzi, Ermanno and Severgnini, Marco and Pellin, Danilo and Suerth, Julia Debora and Baum, Christopher and De Bellis, Gianluca and Mavilio, Fulvio
Deletion of the LTR Enhancer/Promoter Has No Impact on the Integration Profile of MLV Vectors in Human Hematopoietic Progenitors
(2013) in PloS one
Pirona, R. and Vecchietti, A. and Lazzari, B. and Caprera, A. and Malinverni, R. and Consolandi, C. and Severgnini, M. and De Bellis, G. and Chietera, G. and Rossini, L. and Pozzi, C.
Expression profiling of genes involved in the formation of aroma in two peach genotypes
(2013) in Plant biology (Stuttg.)
Cifola, Ingrid and Pietrelli, Alessandro and Consolandi, Clarissa and Severgnini, Marco and Mangano, Eleonora and Russo, Vincenzo and De Bellis, Gianluca and Battaglia, Cristina
Comprehensive Genomic Characterization of Cutaneous Malignant Melanoma Cell Lines Derived from Metastatic Lesions by Whole-Exome Sequencing and SNP Array Profiling
(2013) in PloS one
Moiani, Arianna and Cavazza, Alessia and Miccio, Annarita and Suerth, Julia and Rizzi, Ermanno and Severgnini, Marco and Pellin, Danilo and De Bellis, Gianluca and Baum, Christopher and Mavilio, Fulvio
Self-inactivating and wild-type MLV vectors share the same integration profile in human CD34+hematopoietic progenitor cells but not in human epidermal keratinocytes
(2013) in Human gene therapy
Annarita Miccio, Clelia Peano, Oriana Romano, Guidantonio Tagliazucchi, Luca Petiti, Ingrid Cifola, Ermanno Rizzi, Marco Severgnini, Silvio Bicciato, Gianluca De Bellis, Fulvio Mavilio.
Genome-wide analysis of promoter and enhancer usage in hematopoietic stem cell differentiation.
(2013) in Epigenetics & chromatin
Castiglioni B, Cremonesi P, Severgnini M, Consolandi C, Böhme K, Calo-Mata P
DEVELOPMENT OF LDR-BASED MICROARRAYS FOR THE DETECTION OF MICROBIAL PATHOGENS
(2013) XXIV Congreso de Microbiologia SEM, L'Hospitalet (Barcellona, Spain), 10-13/07/2013
Benelli M(a,b), Pescucci C(b ), Marseglia G(b), Severgnini M (c), Torricelli F (a,b), Magi A (b,d)
Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript
(2012) in Bioinformatics (Oxf., Print)
Candela M, Rampelli S, Turroni S, Severgnini M, Consolandi C, De Bellis G, Masetti R, Ricci G, Pession A, Brigidi P
Unbalance of intestinal microbiota in atopic children
(2012) in BMC Microbiology (Online)
A. Cariani; A. Piano; C. Consolandi; M. Severgnini; B. Castiglioni; G. Caredda; M. Candela; P. Serratore; G. De Bellis; F. Tinti
Detection and characterization of pathogenic vibrios in shellfish by a Ligation Detection Reaction-Universal Array approach
(2012) in International journal of food microbiology
Maccaferri S, Candela M, Turroni S, Centanni M, Severgnini M, Consolandi C, Cavina P, Brigidi P
IBS-associated phylogenetic unbalances of the intestinal microbiota are not reverted by probiotic supplementation
(2012) in Gut microbes (Online)
Turroni F, PEANO C, Pass DA, Foroni E, Severgnini M, Claesson MJ, Kerr C, Hourihane J, Murray D, Fuligni F, Gueimonde M, Margolles A, De Bellis G, O'Toole PW, van Sinderen D, Marchesi JR, Ventura M.
Diversity of bifidobacteria within the infant gut microbiota.
(2012) in PloS one
Moiani, Arianna and Miccio, Annarita and Suerth, Julia and Rizzi, Ermanno and Severgnini, Marco and Pellin, Danilo and Schambach, Axel and Baum, Christopher and De Bellis, Gianluca and Mavilio, Fulvio
Self-inactivating and wild-type MLV vectors have the same integration profile in human CD34(+) hematopoietic progenitor cells
(2012) in Human gene therapy
Consolandi C, Cremonesi P, Severgnini M, Bordoni R, PEANO C., De Bellis G, Castiglioni B
Array Platform for Food Safety and Quality
(2012) in OMICs Technologies: Tools for Food Science., 2012
Böhme K (a), Cremonesi P (b), Severgnini M (c), Fernandéz-No I (a), Castiglioni B (b), Calo-Mata P (a)
Development of a DNA microarray for the detection of pathogenic spoilage bacteria in seafood
(2012) World Scientific Publishing, Londra (Regno Unito) in Microbes in Applied Research: Current Advances and Challenges, 2012
Consolandi, Clarissa; Cremonesi, Paola; Severgnini, Marco; Bordoni, Roberta; Peano, Clelia; De Bellis, Gianluca; Castiglioni, Bianca
Array Platform for Food Safety and Quality
(2012) , 2012
Marco Severgnini, Paola Cremonesi; Clarissa Consolandi; Gianluca De Bellis; Bianca Castiglioni
Advances in DNA Microarray Technology for the Detection of Foodborne Pathogens
(2011) in Food and bioprocess technology (Print)
Marco Candela; Clarissa Consolandi; Marco Severgnini; Elena Biagi; Bianca Castiglioni; Beatrice Vitali; Gianluca De Bellis, Patrizia Brigidi
High taxonomic level fingerprint of the human intestinal microbiota by Ligase Detection Reaction - Universal Array approach
(2010) in BMC Microbiology (Online)
Bonnal RJ, Severgnini M, Castaldi A, Bordoni R, Iacono M, Trimarco A, Torella A, Piluso G, Aurino S, Condorelli G, De Bellis* G, Nigro V
Reliable resequencing of the human dystrophin locus by universal long polymerase chain reaction and massive pyrosequencing
(2010) in Analytical biochemistry (Print)
Andrea Lauri; Bianca Castiglioni; Chiara Gorni; Marco Severgnini; Paola Mariani
A method based on the ligation detection reaction-universal array (LDR-UA) for the detection and characterization of Listeria and Campylobacter strains
(2010) in European food research & technology (Print)
Marta Raschetti; Paola Cremonesi; Stefania Chessa; Marco Severgnini; Daniela Iamartino; Michele Blasi; Giulio Pagnacco; Bianca Castiglioni
A SNP Bovine Panelfor High-Throughput Milk Production, Genetic Disease, Traceability and Paternity Typing
(2010) 9th World Congress on Genetics Applied to Livestock Production, Lipsia, Germania
Paola Cremonesi; Giuliano Pisoni; Marco Severgnini; Clarissa Consolandi; Paolo Moroni; Marta Raschetti; Bianca Castiglioni
Pathogen detection in milk samples by ligation detection reaction-mediated universal array method
(2009) in Journal of dairy science
Marco Severgnini; Paola Cremonesi; Clarissa Consolandi, Giada Caredda, Gianluca De Bellis; Bianca Castiglioni
ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design
(2009) in Nucleic acids research
S. Sabella & G. Vecchio & P. P. Pompa & G. Maruccio & L. Sanarica & A. Della Torre & G. De Bellis & G. Caramenti & C. Consolandi & M. Severgnini & R. Cingolani & R. Rinaldi.
Disposable plastic microreactors for genomic analyses Biomed Microdevices
(2009) in Biomedical microdevices (Print)
Chessa S, Rignanese D, Conte G, Severgnini M, Ceriotti G, Caroli A, Pagnacco G, Castiglioni, B
Application of a microarray technology to SNP detection within genes involved in milk production
(2008) in Chromosome research (Dordrecht. Online)
Clarissa Consolandi; Marco Severgnini; Giada Caredda; Gianluca De Bellis
Anchoring of unmodified oligonucleotides on a chitosan-based array: applications to genotyping and gene expression
(2008) in Analytical biochemistry (Print)
Clarissa Consolandi; Luisa Palmieri; Marco Severgnini; Elena Maestri; Nelson Marmiroli; Caterina Agrimonti; Luisa Baldoni; Paolo Donini; Gianluca De Bellis; Bianca Castiglioni
A procedure for olive oil traceability and authenticity: DNA extraction, multiplex PCR and LDR-universal array analysis
(2008) in European food research & technology (Print)
Clarissa Consolandi; Luisa Palmieri; Silvia Doveri, Elena Maestri; Nelson Marmiroli; Silvia Reale; David Lee; Luciana Baldoni; Nicola Tosti; Marco Severgnini; Gianluca De Bellis; Bianca Castiglioni
Olive variety identification by ligation detection reaction in a universal array format
(2007) in Journal of biotechnology
Severgnini M; Pattini L; Consolandi C; Rizzi E; Battaglia C; De Bellis G; Cerutti S.
Application of the Taguchi method to the analysis of the deposition step in microarray production.
(2006) in IEEE transactions on nanobioscience
Clarissa Consolandi; Marco Severgnini; Bianca Castiglioni; Roberta Bordoni; Andrea Frosini; Cristina Battaglia; Luigi Rossi Bernardi; Gianluca De Bellis
A Structured Chitosan-Based Platform for Biomolecule Attachment to Solid Surfaces: Application to DNA Microarray Preparation
(2006) in Bioconjugate chemistry
Peano C, Severgnini M, Cifola I, De Bellis G, Battaglia C.
Transcriptome amplification methods in gene expression profiling.
(2006) in Expert review of molecular diagnostics
Severgnini M, Bicciato S, Mangano E, Scarlatti F, Mezzelani A, Mattioli M, Ghidoni R, Peano C, Bonnal R, Viti F, Milanesi L, De Bellis G, Battaglia C
Strategies for comparing gene expression profiles from different microarray platforms: Application to a case-control experiment
(2006) in Analytical biochemistry (Print)
Consolandi C(a), Severgnini M(a), Frosini A (a), Caramenti G (a), Fazio MD (b), Ferrara F (b), Zocco A (b), Fischetti A (b), Palmieri M (b), De Bellis G(a).
Polymerase chain reaction of 2-kb cyanobacterial gene and human anti-alpha(1)-chymotrypsin gene from genomic DNA on the In-Check single-use microfabricated silicon chip.
(2006) in Analytical biochemistry (Print)
